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Force-directed layout algorithms are ubiquitously-used tools for network visualisation across a multitude of scientific disciplines. However, they lack theoretical grounding which allows to interpret their outcomes rigorously and can guide…

Social and Information Networks · Computer Science 2025-05-14 Felix Gaisbauer , Armin Pournaki , Sven Banisch , Eckehard Olbrich

We introduce a novel generative model, the Discrete Distribution Networks (DDN), that approximates data distribution using hierarchical discrete distributions. We posit that since the features within a network inherently capture…

Computer Vision and Pattern Recognition · Computer Science 2025-04-17 Lei Yang

CNNs and computational models of biological vision share some fundamental principles, which opened new avenues of research. However, fruitful cross-field research is hampered by conventional CNN architectures being based on spatially and…

Computer Vision and Pattern Recognition · Computer Science 2024-02-05 Nergis Tomen , Silvia L. Pintea , Jan C. van Gemert

Entangled networks are ubiquitous in tissues, polymers, and fabrics. However, their mechanics remain insufficiently understood due to the complexity of the topological constraints at the network level. Here, we develop a mathematical…

Soft Condensed Matter · Physics 2025-09-23 Juntao Huang , Jiabin Liu , Shaoting Lin

Matrix stiffness expressions are derived for the particle movements in an assembly of rigid granules having compliant contacts. The derivations include stiffness terms that arise from the particle shapes at their contacts. These geometric…

Soft Condensed Matter · Physics 2019-01-23 Matthew R. Kuhn , Ching S. Chang

In areas such as computer software and hardware, manufacturing systems, and transportation, engineers encounter networks with arbitrarily large numbers of isomorphic subprocesses. Parameterized systems provide a framework for modeling such…

Formal Languages and Automata Theory · Computer Science 2016-10-03 M. H. Zibaeenejad , J. G. Thistle

In nature, granular materials fail in abrupt avalanches, earthquakes, and other hazardous events, and also creep over time. Proposed failure mechanisms for these systems are broadly framed as friction-limited. However, mechanical…

Soft Condensed Matter · Physics 2025-04-30 Benjamin Allen , Nicholas W. Hayman

Two approaches to incorporate heterogeneity in discrete models are compared. In the first, standard approach, the heterogeneity is dictated by geometrical structure of the discrete system. In the second approach, the heterogeneity is…

Computational Engineering, Finance, and Science · Computer Science 2025-06-26 Jan Raisinger , Qiwei Zhang , John E. Bolander , Jan Eliáš

The force network of a granular assembly, defined by the contact network and the corresponding contact forces, carries valuable information about the state of the packing. Simple analysis of these networks based on the distribution of force…

Soft Condensed Matter · Physics 2016-07-06 L. A. Pugnaloni , C. M. Carlevaro , M. Kramar , K. Mischaikow , L. Kondic

Physics Informed Neural Networks is a numerical method which uses neural networks to approximate solutions of partial differential equations. It has received a lot of attention and is currently used in numerous physical and engineering…

Numerical Analysis · Mathematics 2025-07-10 Dimitrios Gazoulis , Ioannis Gkanis , Charalambos G. Makridakis

Graph neural networks (GNNs) are a popular class of machine learning models whose major advantage is their ability to incorporate a sparse and discrete dependency structure between data points. Unfortunately, GNNs can only be used when such…

Machine Learning · Computer Science 2020-06-22 Luca Franceschi , Mathias Niepert , Massimiliano Pontil , Xiao He

Discrete models have a long tradition in engineering, including finite state machines, Boolean networks, Petri nets, and agent-based models. Of particular importance is the question of how the model structure constrains its dynamics. This…

Molecular Networks · Quantitative Biology 2011-08-02 Reinhard Laubenbacher , David Murrugarra , Alan Veliz-Cuba

Highly concentrated or 'dense" particle suspensions can undergo a sharp increase in viscosity, or shear thickening, under applies stress. Understanding the fundamental features leading to such rheological changes in dense suspensions is…

Graph Convolution Networks (GCNs) are becoming more and more popular for learning node representations on graphs. Though there exist various developments on sampling and aggregation to accelerate the training process and improve the…

Machine Learning · Computer Science 2020-10-30 Xu Zou , Qiuye Jia , Jianwei Zhang , Chang Zhou , Hongxia Yang , Jie Tang

The interactions between particles in particulate systems are organized in `force networks', mesoscale features that bridge between the particle scale and the scale of the system as a whole. While such networks are known to be crucial in…

Randomized Neural Networks explore the behavior of neural systems where the majority of connections are fixed, either in a stochastic or a deterministic fashion. Typical examples of such systems consist of multi-layered neural network…

Machine Learning · Computer Science 2021-02-03 Claudio Gallicchio , Simone Scardapane

Traffic prediction is a critical component of intelligent transportation systems, enabling applications such as congestion mitigation and accident risk prediction. While recent research has explored both graph-based and grid-based…

Computer Vision and Pattern Recognition · Computer Science 2025-09-22 Hyeonseok Jin , Geonmin Kim , Kyungbaek Kim

We introduce a mathematical model for the mechanical behaviour of the eukaryotic cell cytoskeleton. This discrete model involves a regular array of pre-stressed protein filaments that exhibit resistance to enthalpic stretching, joined at…

Quantitative Methods · Quantitative Biology 2023-09-06 J. Köry , N. A. Hill , X. Y. Luo , P. S. Stewart

The elastic response of mechanical, chemical, and biological systems is often modeled using a discrete arrangement of Hookean springs, either representing finite material elements or even the molecular bonds of a system. However, to date,…

Soft Condensed Matter · Physics 2026-03-03 Doron Grossman , Arezki Boudaoud

From biological organs to soft robotics, highly deformable materials are essential components of natural and engineered systems. These highly deformable materials can have heterogeneous material properties, and can experience heterogeneous…

Machine Learning · Computer Science 2023-08-31 Quan Nguyen , Emma Lejeune