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Dynamical systems with a coupled cell network structure can display synchronous solutions, spectral degeneracies and anomalous bifurcation behavior. We explain these phenomena here for homogeneous networks, by showing that every homogeneous…

Dynamical Systems · Mathematics 2013-04-05 Bob Rink , Jan Sanders

Experiments with myxobacterial aggregates reveal standing waves called rippling patterns. Here, these structures are modelled with a simple discrete model based on the interplay between migration and collisions of cells. Head-to-head…

Biological Physics · Physics 2009-11-07 Uwe Boerner , Andreas Deutsch , Hans Reichenbach , Markus Baer

Graph convolutions have gained popularity due to their ability to efficiently operate on data with an irregular geometric structure. However, graph convolutions cause over-smoothing, which refers to representations becoming more similar…

Machine Learning · Computer Science 2024-09-04 Andreas Roth

Many organisms exhibit branching morphologies that twist around each other and become entangled. Entanglement occurs when different objects interlock, creating complex and often irreversible configurations. This physical phenomenon is…

By natural way the hierarchy structure is introduced on directed graphs with weighted adjacencies. Embedded system of algebras of subsets of the set of vertices of such digraph and it's consolidations, which vertices are the elementary sets…

Combinatorics · Mathematics 2007-05-23 V. A. Buslov

Cell layers eliminate unwanted cells through the extrusion process, which underlines healthy versus flawed tissue behaviors. Although several biochemical pathways have been identified, the underlying mechanical basis including the forces…

Soft Condensed Matter · Physics 2023-04-20 Siavash Monfared , Guruswami Ravichandran , Jose E. Andrade , Amin Doostmohammadi

Colloidal and other granular media experience a transition to rigidity known as jamming if the fill fraction is increased beyond a critical value. The resulting jammed structures are locally disordered, bear applied loads inhomogenously,…

Soft Condensed Matter · Physics 2016-08-04 Christopher J. Burke , Timothy J. Atherton

Grain boundaries in extremely confined colloidal smectics possess a topological fine structure with coexisting nematic and tetratic symmetry of the director field. An alternative way to approach the problem of smectic topology is via the…

Soft Condensed Matter · Physics 2024-04-24 René Wittmann

Cell polarization is a critical process that separates molecular species into two distinct regions in prokaryotic and eukaryotic cells, guiding biological processes such as cell division and cell differentiation. Although several underlying…

Molecular Networks · Quantitative Biology 2025-01-28 Yixuan Chen , Guoye Guan , Lei-Han Tang , Chao Tang

We carry out the spatially periodic homogenization of nonlinear bending theory for plates. The derivation is rigorous in the sense of Gamma-convergence. In contrast to what one naturally would expect, our result shows that the limiting…

Analysis of PDEs · Mathematics 2014-05-16 Stefan Neukamm , Heiner Olbermann

The rapid collapse of a polymer, due to external forces or changes in solvent, yields a long-lived `crumpled globule.' The conjectured fractal structure shaped by hierarchical collapse dynamics has proved difficult to establish, even with…

Soft Condensed Matter · Physics 2015-10-07 Guy Bunin , Mehran Kardar

The onset of regular bursts in a group of irregularly bursting neurons with different individual properties is one of the most interesting dynamical properties found in neurobiological systems. In this paper we show how synchronization…

Chaotic Dynamics · Physics 2009-10-31 Nikolai F. Rulkov

Phase separation and coarsening is a phenomenon commonly seen in binary physical and chemical systems that occur in nature. Often times, thermal fluctuations, modeled as stochastic noise, are present in the system and the phase segregation…

Soft Condensed Matter · Physics 2017-04-19 Prerna Gera , David Salac

When stretched in one direction, most solids shrink in the transverse directions. In soft silicone gels, however, we observe that small-scale topographical features grow upon stretching. A quantitative analysis of the topography shows that…

Different cell types aggregate and sort into hierarchical architectures during the formation of animal tissues. The resulting spatial organization depends (in part) on the strength of adhesion of one cell type to itself relative to other…

Quantitative Methods · Quantitative Biology 2023-08-02 Dhananjay Bhaskar , William Y. Zhang , Alexandria Volkening , Björn Sandstede , Ian Y. Wong

In complex systems, groups of interacting objects may form prevalent and persistent spatiotemporal patterns, which we refer to as motifs. These motifs can exhibit features that reveal how individual objects interact with one another.…

Biological Physics · Physics 2025-12-12 Ying Chen Lim , Rakesh Das , Tetsuya Hiraiwa , N. Duane Loh

We present a field theory to describe the composition of a surface spontaneously exchanging matter with its bulk environment. By only assuming matter conservation in the system, we show with extensive numerical simulations that, depending…

Biological Physics · Physics 2023-08-09 Nirvana Caballero , Karsten Kruse , Thierry Giamarchi

Magnetic beads attract each other forming chains. We pushed such chains into an inclined Hele-Shaw cell and discovered that they spontaneously form self-similar patterns. Depending on the angle of inclination of the cell, two completely…

Statistical Mechanics · Physics 2021-04-21 Danilo S. Borges , Hans J. Herrmann , Humberto A. Carmona , José S. Andrade , Ascânio D. Araújo

A stratified pseudomanifold is normal if its links are connected. A normalization of a stratified pseudomanifold $X$ is a normal stratified pseudomanifold $Y$ together with a finite-to-one projection $n:Y\to X$ satisfying a local condition…

Algebraic Topology · Mathematics 2010-04-21 G. Padilla

Order-disorder transitions take place in many physical systems, but observing them in detail in real materials is difficult. In two- or quasi-two-dimensional systems, the transition has been studied by computer simulations and…

Superconductivity · Physics 2015-04-14 M. Zehetmayer