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Based on extensive study of a dynamical systems model of the development of a cell society, a novel theory for stem cell differentiation and its regulation is proposed as the ``chaos hypothesis''. Two fundamental features of stem cell…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Chikara Furusawa , Kunihiko Kaneko

The Fundamental Morphism Theorem is a categorical version of the First Noether Isomorphism Theorem for categories that do not have kernels or cokernels. We consider two categories of graphs. Both categories will admit graphs with multiple…

Combinatorics · Mathematics 2018-08-31 Tien Chih , Demitri Plessas

Coalescing involves gluing one or more rooted graphs onto another graph. Under specific conditions, it is possible to start with cospectral graphs that are coalesced in similar ways that will result in new cospectral graphs. We present a…

Combinatorics · Mathematics 2024-04-03 Sajid Bin Mahamud , Steve Butler , Hannah Graff , Nick Layman , Taylor Luck , Jiah Jin , Noah Owen , Angela Yuan

Adhesive interactions between elastic structures such as graphene sheets, carbon nanotubes, and microtubules have been shown to exhibit hysteresis due to irrecoverable energy loss associated with bond breakage, even in static…

Biological Physics · Physics 2021-02-02 Edvin Memet , Feodor Hilitski , Zvonimir Dogic , L. Mahadevan

Several meters below the coastal ocean surface there are areas of high ecological activity that contain thin layers of concentrated motile phytoplankton. Gyrotactic trapping has been proposed as a potential mechanism for layer formation of…

Fluid Dynamics · Physics 2019-05-22 Smitha Maretvadakethope , Eric E. Keaveny , Yongyun Hwang

In the theory of renormalization for classical dynamical systems, e.g. unimodal maps and critical circle maps, topological conjugacy classes are stable manifolds of renormalization. Physically more realistic systems on the other hand may…

Dynamical Systems · Mathematics 2017-05-12 Marco Martens , Björn Winckler

A novel theory for cell differentiation is proposed, based on simulations with interacting artificial cells which have metabolic networks within, and divide into two when the final product is accumulated. Results of simulations with coupled…

adap-org · Physics 2015-06-30 Kunihiko Kaneko , Tetsuya Yomo

During oscillatory wetting, a phase retardation emerges between contact angle variation and contact line velocity, presenting as a hysteresis loop in their correlation -- an effect we term dynamic hysteresis. This phenomenon is found to be…

Fluid Dynamics · Physics 2024-11-27 Jiaxing Shen , Yaerim Lee , Yuanzhe Li , Stéphane Zaleski , Gustav Amberg , Junichiro Shiomi

We report on simulations of mildly turbulent convection in spherical wedge geometry with varying density stratification. We vary the density contrast within the convection zone by a factor of 20 and study the influence of rotation on the…

Solar and Stellar Astrophysics · Physics 2012-04-25 P. J. Käpylä , M. J. Mantere , A. Brandenburg

We use computer simulations and simple theoretical models to analyze the morphologies that result when rod-like particles end-attach onto a curved surface, creating a finite-thickness monolayer aligned with the surface normal. This geometry…

Soft Condensed Matter · Physics 2016-07-01 Naiyin Yu , Abhijit Ghosh , Michael F. Hagan

When a mixture of two kinds of grains differing in size and shape is poured in a vertical two-dimensional cell, the mixture spontaneously stratifies in alternating layers of small and large grains, whenever the large grains are more faceted…

Statistical Mechanics · Physics 2009-10-31 Hernan A. Makse

Experiments on vertically oscillated granular layers in an evacuated container reveal a sequence of well-defined pattern bifurcations as the container acceleration is increased. Period doublings of the layer center of mass motion and a…

patt-sol · Physics 2009-10-28 Francisco Melo , Paul Umbanhowar , Harry L. Swinney

We study what is clearly one of the most common modes of deformation found in nature, science and engineering, namely the large elastic bending of curved structures, as well as its inverse, unbending, which can be brought beyond complete…

Soft Condensed Matter · Physics 2018-06-11 Taisiya Sigaeva , Robert Mangan , Luigi Vergori , Michel Destrade , Les Sudak

Delamination of coatings and thin films from substrates generates a fascinating variety of patterns, from circular blisters to wrinkles and labyrinth domains, in a way that is not completely understood. We report on large-scale numerical…

Materials Science · Physics 2015-03-12 Zoe Budrikis , Alessandro L. Sellerio , Zsolt Bertalan , Stefano Zapperi

It is known that similar physical systems can reveal two quite different ways of behavior, either coarsening, which creates a uniform state or a large-scale structure, or formation of ordered or disordered patterns, which are never…

Statistical Mechanics · Physics 2015-03-16 A. A. Nepomnyashchy

Many physical systems involve two types of orientational order, which are coupled together. For example, ferroelectric nematic liquid crystals have coupled polar and nematic order, and tilted hexatic phases have coupled polar and hexatic…

Soft Condensed Matter · Physics 2026-03-16 Lincoln Paik , Jonathan V. Selinger

Development combines three basic processes asymmetric --- cell division, signaling and gene regulation --- in a multitude of ways to create an overwhelming diversity of multicellular life-forms. Here, we attempt to chart this diversity…

Molecular Networks · Quantitative Biology 2020-01-01 Somya Mani , Tsvi Tlusty

We investigate the hydrodynamic stability and the formation of patterns in a continuum model of epithelial layers, able to account for the interplay between mechanical activity, lateral adhesion and the $6-$fold orientational order…

Soft Condensed Matter · Physics 2025-02-19 Josep-Maria Armengol-Collado , Leonardo Puggioni , Livio N. Carenza , Luca Giomi

A first-principles theory is developed for the general evolution of a key structural characteristic of planar granular systems - the cell order distribution. The dynamic equations are constructed and solved in closed form for a number of…

Materials Science · Physics 2015-05-04 Raphael Blumenfeld

We study the links between star formation history and structure for a large mass-selected galaxy sample at 0.05 < z_phot < 0.30. The galaxies inhabit a very broad range of environments, from cluster cores to the field. Using HST images, we…