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Using exhaustive Monte Carlo simulations we study the kinetics and mechanism of fibril formation using lattice models as a function of temperature and the number of chains. While these models are, at best, caricatures of peptides, we show…

Biomolecules · Quantitative Biology 2009-11-13 Mai Suan Li , D. K. Klimov , J. E. Straub , D. Thirumalai

An analytic solution for a Fokker-Planck equation that describes propagation of energetic particles through a scattering medium is obtained. The solution is found in terms of an infinite series of mixed moments of particle distribution. The…

High Energy Astrophysical Phenomena · Physics 2017-02-01 M. A. Malkov

We consider the micellization of block copolymers in solution, employing self consistent field theory with an additional constraint that permits the examination of intermediate structures. From the information for an isolated micelle…

Soft Condensed Matter · Physics 2009-11-10 Daniel Duque

Using the formalism of the classical nucleation theory, we derive a novel kinetic equation for the size and composition distribution of an ensemble of aqueous organic aerosols, evolving via nucleation and concomitant chemical aging. This…

Atmospheric and Oceanic Physics · Physics 2020-07-01 Yuri S. Djikaev , Eli Ruckenstein

The nucleation of 1,3,5-Tris(4-bromophenyl)- benzene (3BrY) occurs through the formation of amorphous intermediates. However, a detailed experimental characterization of the structural and dynamic features of such early- stage precursors is…

Soft Condensed Matter · Physics 2018-08-02 Federico Giberti , Matteo Salvalaglio , Marco Mazzotti , Michele Parrinello

The complexation of oppositely charged colloidal objects is considered in this paper as a thermodynamic micellization process where each kind of object needs the others to micellize. This requirement gives rise to quantitatively different…

Soft Condensed Matter · Physics 2009-11-10 Martin Castelnovo

Mixing describes the process by which solutes evolve from an initial heterogeneous state to uniformity under the stirring action of a fluid flow. Fluid stretching forms thin scalar lamellae which coalesce due to molecular diffusion. Owing…

Fluid Dynamics · Physics 2024-05-30 Joris Heyman , Tanguy Le Borgne , Philippe Davy , Emmanuel Villermaux

Irreversible aggregation processes involving reactive and frozen clusters are investigated using the rate equation approach. In aggregation events, two clusters join irreversibly to form a larger cluster, and additionally, reactive clusters…

Statistical Mechanics · Physics 2007-05-23 E. Ben-Naim , P. L. Krapivsky

We studied the morphology of linear particle deposits obtained by inkjet-printing of silica nanoparticle suspension in drying condition where contact line depinning occurs. We show that this evaporation mode can be obtained by adjusting the…

Soft Condensed Matter · Physics 2020-12-09 N. Bridonneau , G. Mattana , V. Noël , S. Zrig , F. Carn

Partial localization is the phenomenon of self-aggregation of mass into high-density structures that are thin in one direction and extended in the others. We give a detailed study of an energy functional that arises in a simplified model…

Mathematical Physics · Physics 2007-05-23 Mark A. Peletier , Matthias Roeger

Cadherins mediate cell-cell adhesion and help the cell determine its shape and function. Here we study collective cadherin organization and interactions within cell-cell contact areas, and find the cadherin density at which a gas-liquid…

Soft Condensed Matter · Physics 2022-06-13 Neil Ibata , Eugene M. Terentjev

A one-dimensional reaction-diffusion model consisting of two species of particles and vacancies on a ring is introduced. The number of particles in one species is conserved while in the other species it can fluctuate because of creation and…

Statistical Mechanics · Physics 2009-11-13 F H Jafarpour , B Ghavami

We consider a collective behavior model in which individuals try to imitate each others' velocity and have a preferred speed. We show that a phase change phenomenon takes place as diffusion decreases, bringing the system from a "disordered"…

Analysis of PDEs · Mathematics 2017-03-28 Alethea B. T. Barbaro , José A. Cañizo , José A. Carrillo , Pierre Degond

We present a minimal model for simulating dynamics of assorted lipid assemblies in a computationally efficient manner. Our model is particle-based and consists of coarse-grained beads put together on a modular platform to give generic…

Chemical Physics · Physics 2019-10-15 John M. A. Grime , Jesper J. Madsen

In order to understand the nuclei which develop during the course of protein folding and unfolding, we examine phase segregation of a single heteropolymer chain which occurs in equilibrium. These segregated conformations are characterized…

Disordered Systems and Neural Networks · Physics 2009-10-31 Rose Du , Alexander Yu. Grosberg , Toyoichi Tanaka

An innovative method is proposed to generate configurations of coarse grained models for polymer melts. This method, largely inspired by chemical ``radical polymerization'', is divided in three stages: (i) nucleation of radicals (reacting…

Statistical Mechanics · Physics 2007-12-24 Fabien Leonforte , Michel Perez , Olivier Lame , Jena-Louis Barrat

Conical inclusions in a lipid bilayer generate an overall spontaneous curvature of the membrane that depends on concentration and geometry of the inclusions. Examples are integral and attached membrane proteins, viruses, and lipid domains.…

Soft Condensed Matter · Physics 2009-10-19 Thorsten Auth , Gerhard Gompper

Preliminary results are presented for the kinetics of phase separation in three distinct models of protein aggregation. The first is a model of the formation of spherical microcrystals of insulin via an initial formation of fractal clusters…

Biological Physics · Physics 2010-05-10 J. D. Gunton , Wei Li , Ya Liu , Toni Perez , S. J. Khan , A. Chakrabarti

During cell migration, cells become polarized, change their shape, and move in response to various internal and external cues. Cell polarization is defined through the spatio-temporal organization of molecules such as PI3K or small GTPases,…

Biological Physics · Physics 2016-07-07 Fabian Spill , Vivi Andasari , Michael Mak , Roger D. Kamm , Muhammad H. Zaman

Lipid domains are found in systems such as multi-component bilayer membranes and single component monolayers at the air-water interface. It was shown by Andelman et al. (Comptes Rendus 301, 675 (1985)) and McConnell et al. (Phys. Chem. {\bf…

Soft Condensed Matter · Physics 2007-05-23 Alex Travesset