Related papers: Knot complexity and the probability of random knot…
We study by Monte Carlo simulations a model of knotted polymer ring adsorbing onto an impenetrable, attractive wall. The polymer is described by a self-avoiding polygon (SAP) on the cubic lattice. We find that the adsorption transition…
The paper introduces Slope Conjecture which relates the degree of the Jones polynomial of a knot and its parallels with the slopes of incompressible surfaces in the knot complement. More precisely, we introduce two knot invariants, the…
In this note, I describe a formalism for treating knots as geometric spaces, and make an application to a simple statistical mechanics computation. The motivation for this study is the natural visual symmetry of the knot, and I describe how…
The concordance genus of a knot K is the minimum three-genus among all knots concordant to K. For prime knots of 10 or fewer crossings there have been three knots for which the concordance genus was unknown. Those three cases are now…
We obtain an exact modularity relation for the $q$-Pochhammer symbol. Using this formula, we show that Zagier's modularity conjecture for a knot $K$ essentially reduces to the arithmeticity conjecture for $K$. In particular, we show that…
Given any oriented link diagram, one can construct knot invariants using skein relations. Usually such a skein relation contains three or four terms. In this paper, the author introduces several new ways to smooth a crossings, and uses a…
We give statistical definitions of the length, l, of a loose prime knot tied into a long, fluctuating ring macromolecule. Monte Carlo results for the equilibrium, good solvent regime show that < l > ~ N^t, where N is the ring length and t ~…
Numerical studies of the average size of trivially knotted polymer loops with no excluded volume are undertaken. Topology is identified by Alexander and Vassiliev degree 2 invariants. Probability of a trivial knot, average gyration radius,…
In this work the thermodynamic properties of short polymer knots (up to 120 segments) defined on a simple cubic lattice are studied with the help of the Wang-Landau Monte Carlo algorithm. The sampling process is performed using pivot…
The viscous flow of polymer chains in dense melts is dominated by topological constraints whenever the single chain contour length, N, becomes larger than the characteristic scale Ne, defining comprehensively the macroscopic rheological…
A knot K is called n-adjacent to another knot K', if K admits a projection containing n generalized crossings such that changing any 0 < m \leq n of them yields a projection of K'. We apply techniques from the theory of sutured 3-manifolds,…
We study spectral gaps of cellular differentials for finite cyclic coverings of knot complements. Their asymptotics can be expressed in terms of irrationality exponents associated with ratios of logarithms of algebraic numbers determined by…
A long standing conjecture states that the ropelength of any alternating knot is at least proportional to its crossing number. In this paper we prove that this conjecture is true. That is, there exists a constant $b_0>0$ such that $R(K)\ge…
A coarse-grained computational model is used to investigate how the bending rigidity of a polymer under tension affects the formation of a trefoil knot. Thermodynamic integration techniques are applied to demonstrate that the free-energy…
The trunk of a knot in $S^3$, defined by Makoto Ozawa, is a measure of geometric complexity similar to the bridge number or width of a knot. We prove that for any two knots $K_1$ and $K_2$, we have $tr(K_1 \# K_2) =…
Let $K$ be a closed convex polyhedron defined by a finite number of linear inequalities. In this paper we refine the theory of abstract tubes (Naiman and Wynn, 1997) associated with $K$ when $K$ is perturbed. In particular, we focus on the…
The ropelength of a knot or link is the minimal number of inches of 1-inch-thick rope that it takes to tie it. The relationship of this measurement to knot and link invariants has been studied by various authors. We give the first results…
We discuss the scattering function of a Gaussian random polygon with N nodes under a given topological constraint through simulation. We obtain the Kratky plot of a Gaussian polygon of N=200 having a fixed knot for some different knots such…
We study the interplay between entropy and topological constraints for a polymer chain in which sliding rings (slip-links) enforce pair contacts between monomers. These slip-links divide a closed ring polymer into a number of sub-loops…
We employ computer simulations and thermodynamic integration to analyse the effects of bending rigidity and slit confinement on the free energy cost of tying knots, $\Delta F_{\rm knotting}$, on polymer chains under tension. A…