Related papers: Knot complexity and the probability of random knot…
It is nontrivial whether the average size of a ring polymer should become smaller or larger under a topological constraint. Making use of some knot invariants, we evaluate numerically the mean square radius of gyration for ring polymers…
We develop a theoretical description of the topological disentanglement occurring when torus knots reach the ends of a semi-flexible polymer under tension. These include decays into simpler knots and total unknotting. The minimal number of…
Given a knot K in the 3-sphere, consider a singular disk bounded by K and the intersections of K with the interior of the disk. The absolute number of intersections, minimised over all choices of singular disk with a given algebraic number…
We investigate the sedimentation of knotted polymers by means of stochastic rotation dynamics, a molecular dynamics algorithm that takes hydrodynamics fully into account. We show that the sedimentation coefficient s, related to the terminal…
The interplay between the topological and geometrical properties of a polymer ring can be clarified by establishing the entanglement trapped in any portion (arc) of the ring. The task requires to close the open arcs into a ring, and the…
Many experiments have been done to determine the relative strength of different knots, and these show that the break in a knotted rope almost invariably occurs at a point just outside the `entrance' to the knot. The influence of knots on…
We discuss the entropy of a circular polymer under a topological constraint. We call it the {\it topological entropy} of the polymer, in short. A ring polymer does not change its topology (knot type) under any thermal fluctuations. Through…
Introduced recently, an n-crossing is a singular point in a projection of a link at which n strands cross such that each strand travels straight through the crossing. We introduce the notion of an \"ubercrossing projection, a knot…
We use numerical simulations to study tangentially active flexible ring polymers with different knot topologies. Simple, unknotted active rings display a transition from an extended phase to a collapsed one upon increasing the degree of…
We make use of the 3D nature of knots and links to find savings in computational complexity when computing knot invariants such as the linking number and, in general, most finite type invariants. These savings are achieved in comparison…
The ropelength of a knot is the quotient of its length and its thickness, the radius of the largest embedded normal tube around the knot. We prove existence and regularity for ropelength minimizers in any knot or link type; these are…
Spontaneous formation of knots in long polymers at equilibrium is inevitable but becomes rare in sufficiently short chains. Here, we show that knotting and knot complexity increase by orders of magnitude in diblock polymers with a fraction…
The presence of slipknots in configurations of proteins and DNA has been shown to affect their functionality, or alter it entirely. Historically, polymers are modeled as polygonal chains in space. As an alternative to space curves, we…
The interplay of geometrical and topological entanglement in semiflexible knotted polymer rings confined inside a spherical cavity is investigated using advanced numerical methods. By using stringent and robust algorithms for locating…
The twisted Alexander polynomial of a knot is defined associated to a linear representation of the knot group. If there exists a surjective homomorphism of a knot group onto a finite group, then we obtain a representation of the knot group…
Sometimes, it is possible to represent a complicated polytope as a projection of a much simpler polytope. To quantify this phenomenon, the extension complexity of a polytope $P$ is defined to be the minimum number of facets of a (possibly…
It is shown that the projection image of an oriented spatial arc to any oriented plane is approximated by a unique arc diagram (up to isomorphic arc diagrams) determined from the spatial arc and the projection. In a separated paper, the…
We introduce tensor network contraction algorithms for the evaluation of the Jones polynomial of arbitrary knots. The value of the Jones polynomial of a knot maps to the partition function of a $q$-state Potts model defined as a planar…
The most tight conformations of prime knots are found with the use of the SONO algorithm. Their curvature and torsion profiles are calculated. Symmetry of the knots is analysed. Connections with the physics of polymers are discussed.
We specify the computational complexity of crosscap numbers of alternating knots by introducing an automatic computation. For an alternating knot $K$, let $\cal{E}$ be the number of edges of its diagram. Then there exists a code such that…