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We study the dynamics of proliferating cell collectives whose microscopic constituents' growth is inhibited by macroscopic growth-induced stress. Discrete particle simulations of a growing collective show the emergence of concentric-ring…

Biological Physics · Physics 2024-05-17 Scott Weady , Bryce Palmer , Adam Lamson , Taeyoon Kim , Reza Farhadifar , Michael J. Shelley

We study the relaxation dynamics of a coarse-grained polymer chain at different degrees of stretching by both analytical means and numerical simulations. The macromolecule is modelled as a string of beads, connected by anharmonic springs,…

Soft Condensed Matter · Physics 2009-11-13 M. Febbo , A. Milchev , V. Rostiashvili , T. A. Vilgis , D. Dimitrov

Single-molecule pulling techniques have emerged as versatile tools for probing the noncovalent forces holding together the secondary and tertiary structure of macromolecules. They also constitute a way to study at the single-molecule level…

Biological Physics · Physics 2013-02-19 Ignacio Franco , Mark A. Ratner , George C. Schatz

The Method of Continuous Molecular Fields is a universal approach to predict various properties of chemical compounds, in which molecules are represented by means of continuous fields (such as electrostatic, steric, electron density…

Chemical Physics · Physics 2013-11-07 Igor I. Baskin , Nelly I. Zhokhova

We study flexible polymer macromolecules in a crowded (porous) environment, modelling them as self-attracting self-avoiding walks (SASAW) on site-diluted percolative lattices in space dimensions d=2, 3. The influence of stretching force on…

Soft Condensed Matter · Physics 2009-12-09 V. Blavatska , W. Janke

Fundamental understanding of the effect of microscopic parameters on the dynamics of probe particles in different complex environments has wide implications. Examples include diffusion of proteins in the biological hydrogels, porous media,…

Soft Condensed Matter · Physics 2019-09-11 Praveen Kumar , Ligesh Theeyancheri , Subhasish Chaki , Rajarshi Chakrabarti

Jammed packings' mechanical properties depend sensitively on their detailed local structure. Here we provide a complete characterization of the pair correlation close to contact and of the force distribution of jammed frictionless spheres.…

Statistical Mechanics · Physics 2012-11-15 Patrick Charbonneau , Eric I. Corwin , Giorgio Parisi , Francesco Zamponi

Loop extrusion by motor proteins mediates the attractive interactions in chromatin on the length scale of megabases, providing the polymer with a well-defined structure and at the same time determining its dynamics. The mean square…

Biomolecules · Quantitative Biology 2023-07-12 E. Marchi , Y. Zhan , G. Tiana

Precise control and study of molecules is challenging due to the variety of internal degrees of freedom and local coordinates that are typically not controlled in an experiment. Employing quantum gas microscopy to position and resolve the…

The ability to tune the microstructures formed by block copolymers using accessible physical approaches provides control for practical material applications. A common strategy involves the addition of homopolymers, which can induce…

Soft Condensed Matter · Physics 2025-04-11 Xiangyu Zhang , Jing Zong , Dong Meng

We develop a formalism for the calculation of the macroscopic dielectric response of composite systems made of particles of one material embedded periodically within a matrix of another material, each of which is characterized by a well…

The cytoskeleton of eukaryotic cells provides mechanical support and governs intracellular transport. These functions rely on the complex mechanical properties of networks of semiflexible protein filaments. Recent theoretical interest has…

Soft Condensed Matter · Physics 2012-11-01 M. Atakhorrami , G. H. Koenderink , J. F. Palierne , F. C. MacKintosh , C. F. Schmidt

We study the relationship between the granular contact angle distribution and local particle friction on the macroscopic friction and bulk modulus in non-cohesive disk packings. Molecular dynamics in two dimensions are used to simulate…

Soft Condensed Matter · Physics 2024-11-06 Juan C. P. Petit , Xavier García , Iván Sánchez , Ernesto Medina

Lobe structures due to the application of resonant magnetic perturbations (RMPs) have been observed using wide-angle imaging of light from He1+ ions in the vicinity of the lower X-point in MAST. The data presented are from lower single-null…

Plasma Physics · Physics 2014-08-13 J. R. Harrison , A. Kirk , I. T. Chapman , P. Cahyna , Yueqiang Liu , E. Nardon , A. J. Thornton

The extent to which galaxy structure is shaped by environment beyond the local universe, once stellar mass is controlled, remains an open question in galaxy evolution. We address this challenge using an unprecedentedly large sample of…

A modified Metropolis atomistic simulation is proposed to model the structure of grain boundaries (GBs) and interfaces in ionic nanostructured systems and is applied to the magnetically interesting case of iron trifluoride (FeF3). We chose…

Mesoscale and Nanoscale Physics · Physics 2012-05-10 B. Fongang , I. Labaye , S. Zekeng , F. Calvayrac , J. M. Greneche

The full understanding of cellular functions requires information about protein numbers for various biomolecular assemblies and their dynamics, which can be partly accessed by super-resolution fluorescence microscopy. Yet, many protein…

Biological Physics · Physics 2020-06-17 Kristin S. Grußmayer , Klaus Yserentant , Dirk-Peter Herten

We investigate the flowing behavior of dense suspensions of non-colloidal particles, by coupling macroscopic rheometric experiments and local velocity and concentration measurements through MRI techniques. We find that the flow is localized…

Soft Condensed Matter · Physics 2016-08-16 Guillaume Ovarlez , François Bertrand , Stéphane Rodts

We investigate the effective properties (conductivity, diffusivity and elastic moduli) of model random composite media derived from Gaussian random fields and overlapping hollow spheres. The morphologies generated in the models exhibit low…

Disordered Systems and Neural Networks · Physics 2009-10-31 Anthony Roberts , Mark Knackstedt

The Interferometric Bidimensional Spectrometer (IBIS) installed at the Dunn Solar Telescope of the NSO/SP is used to investigate the morphology and dynamics of the lower chromosphere and the virtually non-magnetic fluctosphere below. The…

Solar and Stellar Astrophysics · Physics 2014-11-20 F. Wöger , S. Wedemeyer-Böhm , H. Uitenbroek , T. R. Rimmele
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