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Phylogenetic networks generalize phylogenetic trees by allowing the modelization of events of reticulate evolution. Among the different kinds of phylogenetic networks that have been proposed in the literature, the subclass of binary…

Data Structures and Algorithms · Computer Science 2020-07-01 Gabriel Cardona , Joan Carles Pons , Celine Scornavacca

Normalising flows are tractable probabilistic models that leverage the power of deep learning to describe a wide parametric family of distributions, all while remaining trainable using maximum likelihood. We discuss how these methods can be…

Machine Learning · Computer Science 2020-07-14 Simon Alexanderson , Gustav Eje Henter

Complex networks have abundant and extensive applications in real life. Recently, researchers have proposed a number of complex networks, in which some are deterministic and others are random. Compared with deterministic networks, random…

Physics and Society · Physics 2020-11-02 Xiaomin Wang , Fei Ma

We consider distributed networks, such as peer-to-peer networks, whose structure can be manipulated by adjusting the rules by which vertices enter and leave the network. We focus in particular on degree distributions and show that, with…

Physics and Society · Physics 2007-10-18 Gourab Ghoshal , M. E. J. Newman

In complex networks it is common to model a network or generate a surrogate network based on the conservation of the network's degree distribution. We provide an alternative network model based on the conservation of connection density…

Physics and Society · Physics 2015-05-27 R. J. Mondragon , S. Zhou

Real social networks are often compared to random graphs in order to assess whether their typological structure could be the result of random processes. However, an Erd\H{o}s-R\'enyi random graph in large scale is often lack of local…

Physics and Society · Physics 2013-01-30 Cheng Wang

Real networks exhibit nontrivial topological features such as heavy-tailed degree distribution, high clustering, and small-worldness. Researchers have developed several generative models for synthesizing artificial networks that are…

Social and Information Networks · Computer Science 2014-02-04 Sadegh Motallebi , Sadegh Aliakbary , Jafar Habibi

Random graphs are more and more used for modeling real world networks such as evolutionary networks of proteins. For this purpose we look at two different models and analyze how properties like connectedness and degree distributions are…

Probability · Mathematics 2019-02-05 Klemens Taglieber , Uta Freiberg

Net-trees are a general purpose data structure for metric data that have been used to solve a wide range of algorithmic problems. We give a simple randomized algorithm to construct net-trees on doubling metrics using $O(n\log n)$ time in…

Computational Geometry · Computer Science 2018-09-06 Mahmoodreza Jahanseir , Donald R. Sheehy

Paper proposes a model of large networks based on a random preferential attachment graph with addition of complete subgraphs (cliques). The proposed model refers to models of random graphs following the nonlinear preferential attachment…

Social and Information Networks · Computer Science 2019-04-05 E. B. Yudin

The Watts-Strogatz algorithm of transferring the square lattice to a small world network is modified by introducing preferential rewiring constrained by connectivity demand. The evolution of the network is two-step: sequential preferential…

Statistical Mechanics · Physics 2009-11-11 Danuta Makowiec

We study stochastic processes that generate non-growing complex networks without self-loops and multiple edges (simple graphs). The work concentrates on understanding and formulation of constraints which keep the rewiring stochastic…

Physics and Society · Physics 2009-07-10 Tomas Hruz , Michal Natora , Madhuresh Agrawal

Galled trees are studied as a recombination model in theoretic population genetics. This class of phylogenetic networks has been generalized to tree-child networks, normal networks and tree-based networks by relaxing a structural condition.…

Populations and Evolution · Quantitative Biology 2019-08-05 Louxin Zhang

We investigate a simple generative model for network formation. The model is designed to describe the growth of networks of kinship, trading, corporate alliances, or autocatalytic chemical reactions, where feedback is an essential element…

Disordered Systems and Neural Networks · Physics 2009-11-11 Douglas R. White , Natasa Kejzar , Constantino Tsallis , Doyne Farmer , Scott White

Formation of a molecular network from multifunctional precursors is modelled with a random graph process. The random graph model favours reactivity for monomers that are positioned close in the network topology, and disfavours reactivity…

Soft Condensed Matter · Physics 2019-08-21 Ivan Kryven , Jorien Duivenvoorden , Joen Hermans , Piet D. Iedema

Network structure is often considered one of the most important features of a network, and various models exist to generate graphs having one of the most studied types of structures, such as blocks/communities or spatial structures. In this…

Social and Information Networks · Computer Science 2023-10-02 Remy Cazabet , Salvatore Citraro , Giulio Rossetti

We propose a method of generating different scale-free networks, which has several input parameters in order to adjust the structure, so that they can serve as a basis for computer simulation of real-world phenomena. The topological…

Social and Information Networks · Computer Science 2014-01-30 Imre Varga , András Németh , Gergely Kocsis

Although the origin of the fat-tail characteristic of the degree distribution in complex networks has been extensively researched, the underlying cause of the degree distribution characteristic across the complete range of degrees remains…

Physics and Society · Physics 2023-11-07 Bin Zhou , Petter Holme , Zaiwu Gong , Choujun Zhan , Yao Huang , Xin Lu , Xiangyi Meng

We define a growing model of random graphs. Given a sequence of nonnegative integers $\{d_n\}_{n=0}^\infty$ with the property that $d_i\leq i$, we construct a random graph on countably infinitely many vertices $v_0,v_1\ldots$ by the…

Combinatorics · Mathematics 2017-04-04 Csaba Biró , Udayan B. Darji

Many real-world complex networks arise as a result of a competition between growth and rewiring processes. Usually the initial part of the evolution is dominated by growth while the later one rather by rewiring. The initial growth allows…

Statistical Mechanics · Physics 2020-10-07 Zdzislaw Burda , Michalina Kotwica , Krzysztof Malarz