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We discuss the development of cluster algorithms from the viewpoint of probability theory and not from the usual viewpoint of a particular model. By using the perspective of probability theory, we detail the nature of a cluster algorithm,…

Condensed Matter · Physics 2009-10-22 N. Kawashima , J. E. Gubernatis

We present a Monte Carlo method for computing the renormalized coupling constants and the critical exponents within renormalization theory. The scheme, which derives from a variational principle, overcomes critical slowing down, by means of…

Statistical Mechanics · Physics 2017-12-06 Yantao Wu , Roberto Car

Principal component analysis (PCA) is a widespread technique for data analysis that relies on the covariance-correlation matrix of the analyzed data. However to properly work with high-dimensional data, PCA poses severe mathematical…

Quantitative Methods · Quantitative Biology 2018-10-18 Luigi Leonardo Palese

Rigidity Percolation is a crucial framework for describing rigidity transitions in amorphous systems. We present a new, efficient algorithm to study central-force Rigidity Percolation in two dimensions. This algorithm combines the Pebble…

Soft Condensed Matter · Physics 2026-02-12 Nina Javerzat , Daniele Notarmuzi

We apply and test the recently proposed "extended scaling" scheme in an analysis of the magnetic susceptibility of Ising systems above the upper critical dimension. The data are obtained by Monte Carlo simulations using both the…

Statistical Mechanics · Physics 2009-11-13 Bertrand Berche , Christophe Chatelain , Chania Dhall , Ralph Kenna , Robert Low , Jean-Charles Walter

The probability of simultaneous occurence of at least k spanning clusters has been studied by Monte Carlo simulations on the 2D square lattice at the bond percolation threshold Pc=1/2. The calculated probabilities for free boundary…

Statistical Mechanics · Physics 2009-10-31 L. N. Shchur , S. S. Kosyakov

Consider a central problem in randomized approximation schemes that use a Monte Carlo approach. Given a sequence of independent, identically distributed random variables $X_1,X_2,\ldots$ with mean $\mu$ and standard deviation at most $c…

Statistics Theory · Mathematics 2014-11-18 Mark Huber

We investigate nonequilibrium relaxations of Ising models at the critical point by using a cluster update. While preceding studies imply that nonequilibrium cluster-flip dynamics at the critical point are universally described by the…

Statistical Mechanics · Physics 2018-11-21 Yusuke Tomita , Yoshihiko Nonomura

Subspace clustering (SC) is a popular method for dimensionality reduction of high-dimensional data, where it generalizes Principal Component Analysis (PCA). Recently, several methods have been proposed to enhance the robustness of PCA and…

Data Structures and Algorithms · Computer Science 2015-06-09 Sanghyuk Chun , Yung-Kyun Noh , Jinwoo Shin

A new Monte Carlo algorithm for 2-dimensional spin glasses is presented. The use of clusters makes possible global updates and leads to a gain in speed of several orders of magnitude. As an example, we study the 2-dimensional +/-J…

Disordered Systems and Neural Networks · Physics 2009-11-07 J. Houdayer

Fractal percolation has been introduced by Mandelbrot in 1974. We study the two-dimensional case, with integer subdivision index M and survival probability p. It is well known that there exists a non-trivial critical value p_c(M) such that…

Probability · Mathematics 2016-09-23 Henk Don

We study the percolation properties of geometrical clusters defined in the overlap space of two statistically independent replicas of a square-lattice Ising model that are simulated at the same temperature. In particular, we consider two…

Statistical Mechanics · Physics 2024-02-23 Michail Akritidis , Nikolaos G. Fytas , Martin Weigel

In random percolation one finds that the mean field regime above the upper critical dimension can simply be explained through the coexistence of infinite percolating clusters at the critical point. Because of the mapping between percolation…

High Energy Physics - Lattice · Physics 2009-11-07 G. Andronico , A. Coniglio , S. Fortunato

We use the single-cluster Monte Carlo update algorithm to simulate the Ising model on two-dimensional Poissonian random lattices of Delaunay type with up to 80\,000 sites. By applying reweighting techniques and finite-size scaling analyses…

High Energy Physics - Lattice · Physics 2009-10-22 W. Janke , M. Katoot , R. Villanova

In this paper we present an extension of population-based Markov chain Monte Carlo (MCMC) to the trans-dimensional case. One of the main challenges in MCMC-based inference is that of simulating from high and trans-dimensional target…

Computation · Statistics 2007-11-02 Ajay Jasra , David A. Stephens , Chris C. Holmes

Working within the Stochastic Series Expansion (SSE) framework, we construct efficient quantum cluster algorithms for transverse field Ising antiferromagnets on the pyrochlore lattice and the planar pyrochlore lattice, for the fully…

Strongly Correlated Electrons · Physics 2019-07-24 Sounak Biswas , Kedar Damle

Genome wide comparisons between enteric bacteria yield large sets of conserved putative regulatory sites on a gene by gene basis that need to be clustered into regulons. Using the assumption that regulatory sites can be represented as…

Biological Physics · Physics 2009-11-07 Erik van Nimwegen , Mihaela Zavolan , Nikolaus Rajewsky , Eric D. Siggia

Process monitoring and control requires detection of structural changes in a data stream in real time. This article introduces an efficient sequential Monte Carlo algorithm designed for learning unknown changepoints in continuous time. The…

Applications · Statistics 2015-09-29 Melissa J. M. Turcotte , Nicholas A. Heard

Markov Chain Monte Carlo (MCMC) underlies both statistical physics and combinatorial optimization, but mixes slowly near critical points and in rough landscapes. Parallel Tempering (PT) improves mixing by swapping replicas across…

Machine Learning · Computer Science 2025-09-30 Saleh Bunaiyan , Corentin Delacour , Shuvro Chowdhury , Kyle Lee , Kerem Y. Camsari

We present a novel Exchange Monte Carlo (EMC) method designed for application in continuous-space Path Integral Monte Carlo (PIMC) simulations at finite temperature. Traditional PIMC methods for bosonic systems suffer from long…

Statistical Mechanics · Physics 2026-05-26 Xun Zhao , Synge Todo
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