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We study complex networks of stochastic two-state units. Our aim is to model discrete stochastic excitable dynamics with a rest and an excited state. Both states are assumed to possess different waiting time distributions. The rest state is…

Physics and Society · Physics 2016-12-02 Simon Christ , Bernard Sonnenschein , Lutz Schimansky-Geier

We describe a mechanism for pronounced biochemical oscillations, relevant to microscopic systems, such as the intracellular environment. This mechanism operates for reaction schemes which, when modeled using deterministic rate equations,…

Cell Behavior · Quantitative Biology 2009-11-13 A. J. McKane , J. D. Nagy , T. J. Newman , M. O. Stefanini

The dynamics of a system, consisting of a particle initially in a Gaussian state interacting with a field mode, under the action of repeated measurements performed on the particle, is examined. It is shown that regardless of its initial…

Quantum Physics · Physics 2010-10-26 Bruno Bellomo , Giuseppe Compagno , Hiromichi Nakazato , Kazuya Yuasa

Three thought experiments demonstrate that under certain circumstances electromagnetic fields have to be attenuated or amplified multiplicatively in order not to violate the conservation of energy. Modulation of radiation by means other…

Classical Physics · Physics 2016-11-14 Joerg Fricke

Rate processes are simple and analytically tractable models for many dynamical systems which switch stochastically between a discrete set of quasi stationary states but they may also approximate continuous processes by coarse grained,…

Statistical Mechanics · Physics 2013-03-11 R. Toenjes , H. Kori

We analyze the probabilities of large infrequent fluctuations in systems driven by external fields. In a broad range of the field magnitudes, the logarithm of the fluctuation probability is linear in the field magnitude, and the response…

Statistical Mechanics · Physics 2008-02-03 M. I. Dykman , H. Rabitz , V. N. Smelyanskiy , B. E. Vugmeister

The power spectral density of an observable quantifies the amount of fluctuations at a given frequency and can reveal the influence of different timescales on the observable's dynamics. Here, we show that the spectral density in a…

Statistical Mechanics · Physics 2023-06-02 Andreas Dechant

We introduce driven exclusion processes with internal states that serve as generic transport models in various contexts, ranging from molecular or vehicular traffic on parallel lanes to spintronics. The ensuing non-equilibrium steady states…

Statistical Mechanics · Physics 2008-01-31 Tobias Reichenbach , Thomas Franosch , Erwin Frey

We provide an overview on how to use the measurable selection techniques to derive the dynamic programming principle for a general stochastic optimal control/stopping problem. By considering its martingale problem formulation on the…

Optimization and Control · Mathematics 2024-10-03 Nicole El Karoui , Xiaolu Tan

Phase separation is the thermodynamic process that explains how droplets form in multicomponent fluids. These droplets can provide controlled compartments to localize chemical reactions, and reactions can also affect the droplets' dynamics.…

Soft Condensed Matter · Physics 2022-09-02 David Zwicker

Stochastic processes govern the time evolution of a huge variety of realistic systems throughout the sciences. A minimal description of noisy many-particle systems within a Markovian picture and with a notion of spatial dimension is given…

Statistical Mechanics · Physics 2021-02-25 Andrea Pizzi , Andreas Nunnenkamp , Johannes Knolle

We suggest a better mathematical method, fractional calculus, for studying the behavior of the atom-field interaction in photonic crystals. By studying the spontaneous emission of an atom in a photonic crystal with one-band isotropic model,…

Materials Science · Physics 2015-05-13 Szu-Cheng Cheng , Jing-Nuo Wu , Ming-Rung Tsai , Wen-Feng Hsieh

Flexible modulation of temporal dynamics in neural sequences underlies many cognitive processes. For instance, we can adaptively change the speed of motor sequences and speech. While such flexibility is influenced by various factors such as…

Neurons and Cognition · Quantitative Biology 2025-04-15 Tomoki Kurikawa , Kunihiko Kaneko

In recent years considerable portion of the computer science community has focused its attention on understanding living cell biochemistry and efforts to understand such complication reaction environment have spread over wide front, ranging…

Computational Engineering, Finance, and Science · Computer Science 2009-11-13 Zoran Konkoli

Timing is essential for many cellular processes, from cellular responses to external stimuli to the cell cycle and circadian clocks. Many of these processes are based on gene expression. For example, an activated gene may be required to…

Molecular Networks · Quantitative Biology 2017-02-24 Alma Dal Co , Marco Cosentino Lagomarsino , Michele Caselle , Matteo Osella

The appealing feature of molecular electronics is the possibility of exploiting functionality built within a single molecule. This functionality can be employed, for example, for sensing or switching purposes. Thus, ideally, the associated…

We study the spread of a novel state in a network, in the presence of an exogenous control. The considered controlled evolutionary dynamics is a non-homogeneous Markov process that describes the evolution of the states of all nodes in the…

Systems and Control · Electrical Eng. & Systems 2020-06-23 Lorenzo Zino , Giacomo Como , Fabio Fagnani

A dynamic diffraction theory is developed for describing electron diffraction by dielectric crystals in a strong electromagnetic field. It is shown that additional diffraction maxima arise in an electromagnetic field, their intensity…

Atomic Physics · Physics 2018-02-15 Yulian Shabolovski

The reactive process of barrier escaping from the metastable potential well is studied together with the extension of Kramers' rate formula to the fractional case. Characteristic quantities are computed for an thimbleful of insight into the…

Chemical Physics · Physics 2015-02-24 Chun-Yang Wang

Controlling large particle systems in collective dynamics by a few agents is a subject of high practical importance, e.g., in evacuation dynamics. In this paper we study an instantaneous control approach to steer an interacting particle…

Optimization and Control · Mathematics 2020-01-29 Martin Burger , Rene Pinnau , Claudia Totzeck , Oliver Tse , Andreas Roth