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In this paper a lattice model for diffusional transport of particles in the interphase cell nucleus is proposed. Dense networks of chromatin fibers are created by three different methods: randomly distributed, non-interconnected obstacles,…

Biological Physics · Physics 2009-11-13 Annika Wedemeier , Holger Merlitz , Chen-Xu Wu , Jörg Langowski

Breakage-Fusion-Bridge cycles in cancer arise when a broken segment of DNA is duplicated and an end from each copy joined together. This structure then `unfolds' into a new piece of palindromic DNA. This is one mechanism responsible for the…

Genomics · Quantitative Biology 2012-11-13 CD Greenman , SL Cooke , J Marshall , MR Stratton , PJ Campbell

We use an extension of the diagrammatic rules in random matrix theory to evaluate spectral properties of finite and infinite products of large complex matrices and large hermitian matrices. The infinite product case allows us to define a…

Mathematical Physics · Physics 2015-06-26 Ewa Gudowska-Nowak , Romuald A. Janik , Jerzy Jurkiewicz , Maciej A. Nowak

We use Monte-Carlo simulations to study island formation in the growth of thin semiconducting films deposited on lattice-mismatched substrates. It is known that islands nucleate with critical nuclei of about one atom and grow two…

Materials Science · Physics 2009-10-31 K. E. Khor , S. Das Sarma

The quantum diffusion of a particle in an initially localized state on a cyclic lattice with N sites is studied. Diffusion and reconstruction time are calculated. Strong differences are found for even or odd number of sites and the limit…

Quantum Physics · Physics 2007-05-23 A. C. de la Torre , H. O. Martin , D. Goyeneche

Surface growth is a crucial component of many natural and artificial processes from cell proliferation to additive manufacturing. In elastic systems surface growth is usually accompanied by the development of geometrical incompatibility…

Soft Condensed Matter · Physics 2019-05-08 Lev Truskinovsky , Giuseppe Zurlo

Inelastic surface growth associated with continuous creation of incompatibility on the boundary of an evolving body is behind a variety of natural and technological processes, including embryonic development and 3D printing. In this paper…

Soft Condensed Matter · Physics 2017-12-25 Giuseppe Zurlo , Lev Truskinovsky

It is widely believed that heterogeneous nucleation occurs without an activation process when the surface is completely wettable. In this report, we review our previous work [J.Chem.Phys {\bf 134}, 234709 (2011)] to show that the critical…

Materials Science · Physics 2013-07-04 Masao Iwamatsu

We study the stochastic dynamics of a symmetric self-chemotactic particle and determine the long-time behavior of its mean squared displacement (MSD). The attractive or repulsive interaction of the particle with the chemical field that it…

Statistical Mechanics · Physics 2025-08-29 Jacopo Romano , Andrea Gambassi

The critical radius of a nucleus grown by diffusion in a solution is studied thermodynamically as well as kinetically. The thermodynamic growth equation called Zeldovich equation of classical nucleation theory (CNT) and the kinetic…

Soft Condensed Matter · Physics 2014-03-05 Masao Iwamatsu

We have performed Kinetic Monte Carlo simulation work to study the effect of diffusion anisotropy, bonding anisotropy and edge diffusion on island formation at different temperatures during the sub-monolayer film growth in Molecular Beam…

Materials Science · Physics 2019-12-13 Jagannath Devkota , Shankar P. Shrestha

We extend Nuclear Lattice Effective Field Theory (NLEFT) to medium-mass nuclei, and present results for the ground states of alpha nuclei from $^4$He to $^{28}$Si, calculated up to next-to-next-to-leading order (NNLO) in the EFT expansion.…

Nuclear Theory · Physics 2014-04-11 Timo A. Lähde , Evgeny Epelbaum , Hermann Krebs , Dean Lee , Ulf-G. Meißner , Gautam Rupak

The steps at the crystal surfaces could be transparent for the migrating adatoms. In the case of significant transparency the velocity of a given step in a given moment is affected by detachment of atoms from rather distant steps in rather…

Other Condensed Matter · Physics 2008-10-15 Bogdan Ranguelov , Stoyan Stoyanov

We study branching diffusions in a bounded domain $D$ of $\mathbb{R}^d$ in which particles are killed upon hitting the boundary $\partial D$. It is known that any such process undergoes a phase transition when the branching rate $\beta$…

Probability · Mathematics 2018-04-24 Ellen Powell

Understanding surface dynamics during epitaxial film growth is key to growing high quality materials with controllable properties. X-ray photon correlation spectroscopy (XPCS) using coherent x-rays opens new opportunities for in situ…

We consider an elliptic and time-inhomogeneous diffusion process with time-periodic coefficients evolving in a bounded domain of $\mathbb{R}^d$ with a smooth boundary. The process is killed when it hits the boundary of the domain (hard…

Probability · Mathematics 2016-03-22 Pierre Del Moral , Denis Villemonais

Aluminum alloys, the most widely utilized lightweight structural materials, predominantly depend on coherent complex-structured nano-plates to enhance their mechanical properties. Despite several decades of research, the atomic-scale…

Materials Science · Physics 2024-10-22 Junyuan Bai , Gaowu Qin , Xueyong Pang , Zhihao Zhao

The short time behavior of nucleation probabilities is studied by representing nucleation as diffusion in a potential well with escape over a barrier. If initially all growing nuclei start at the bottom of the well, the first nucleation…

Statistical Mechanics · Physics 2007-05-23 Henk van Beijeren

We consider two sequential models of deposition and aggregation for particles. The first model (No Diffusion) simulates surface diffusion through a deterministic capture area, while the second (Sequential Diffusion) allows the atoms to…

Materials Science · Physics 2007-05-23 Daniele Vilone , Claudio Castellano , Paolo Politi

The r\^{o}le of inelastic diffraction in elastic scattering of nuclei is studied in the formalism of \emph{diffractive limit}. The results obtained for scattering of the $\alpha$--particles on light nuclei show that the nucleonic…

High Energy Physics - Phenomenology · Physics 2017-08-23 A. MaŁecki , D. Goc-JagŁo