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We develop a correlation-corrected transport theory in order to predict ionic and polymer transport properties of membrane nanopores in physical conditions where mean-field electrostatics breaks down. The experimentally observed low KCl…

Soft Condensed Matter · Physics 2014-11-06 Sahin Buyukdagli , Tapio Ala-Nissila

Gel electrophoresis allows to separate knotted DNA (nicked circular) of equal length according to the knot type. At low electric fields, complex knots being more compact, drift faster than simpler knots. Recent experiments have shown that…

Biological Physics · Physics 2009-11-11 C. Weber , A. Stasiak , M. Fleurant , P. De Los Rios , G. Dietler

A systematic study of the transport energy in disordered organic semiconductors based on variable range hopping theory has been presented here. The temperature, electric field, material disorder and carrier concentration dependent transport…

Disordered Systems and Neural Networks · Physics 2012-11-21 Ling Li , Nianduan Lu , Ming Liu

A new approach in the quantum theory of few-electron nanoelectronic devices -- the S-matrix approach -- is presented in a simple example: a single-electron transistor consisting of a single-level quantum dot connected with two metallic…

High Energy Physics - Phenomenology · Physics 2007-05-23 Nguyen Van Hieu , Nguyen Bich Ha

A model of self-avoiding walk with suitable constraints on self-attraction is developed to describe the conformational behaviour of a single stranded short DNA molecule that form hairpin structure. Using exact enumeration method we…

Soft Condensed Matter · Physics 2007-05-23 Debaprasad Giri , Sanjay Kumar , Yashwant Singh

We present a theoretical analysis of the environment effects on charge transport in double-stranded synthetic poly(G)-poly(C) DNA molecules attached to two ideal leads. Coupling of the DNA to the environment results in two effects: (i)…

Soft Condensed Matter · Physics 2009-07-13 A. V. Malyshev , E. Diaz , F. Dominguez-Adame , V. A. Malyshev

Energy transport can reveal information about interacting many-body systems beyond other transport probes. In particular, in one dimension it has been shown that the energy current is directly proportional to the central charge, thus…

Strongly Correlated Electrons · Physics 2020-05-27 Sonja Fischer , Christoph Karrasch , Dirk Schuricht , Lars Fritz

We report on a new class of hybrid electronic devices based on a DNA nucleoside (deoxyguanosine lipophilic derivative) whose assembled polymeric ribbons interconnect a submicron metallic gate. The device exhibits large conductivity at room…

Soft Condensed Matter · Physics 2007-05-23 R. Rinaldi , E. Branca , R. Cingolani , R. Di Felice , E. Molinari , S. Masiero , G. P. Spada , G. Gottarelli , A. Garbesi

Optical experiments on calf thymus DNA films subjected to different buffer environments are reported. The optical conductivity is that of a disordered or lightly doped semiconductor with a well-defined band-gap for charge excitations and…

Disordered Systems and Neural Networks · Physics 2007-05-23 E. Helgren , G. Gruner , A. Omerzu , D. Mihailovic , R. Podgornik , H. Grimm

We study a model for polaron-like charge transport mechanism along DNA molecules with emphasis on the impact of parametrical and structural disorder. Our model Hamiltonian takes into account the coupling of the charge carrier to two…

Pattern Formation and Solitons · Physics 2015-06-26 D. Hennig , J. F. R. Archilla , J. Agarwal

A theoretical understanding of the experimental electronic transport phenomena in gas sensors based on DNA functionalized graphene is presented by quantitatively investigating the time-dependent electronic transport in these devices using…

Mesoscale and Nanoscale Physics · Physics 2013-09-16 P. Gurung , N. Deo

In all theoretical treatments of electron transport through single molecules between two metal electrodes, a clear distinction has to be made between a coherent transport regime with a strong coupling throughout the junction and a Coulomb…

Mesoscale and Nanoscale Physics · Physics 2015-06-05 Robert Stadler , Jerome Cornil , Victor Geskin

Damaged or mismatched bases in DNA can be repaired by Base Excision Repair (BER) enzymes that replace the defective base. Although the detailed molecular structures of many BER enzymes are known, how they colocalize to lesions remains…

Biomolecules · Quantitative Biology 2009-11-13 Pak-Wing Fok , Chin-Lin Guo , Tom Chou

Various charge migration mechanisms in the DNA are studied within the framework of the Peyrard-Bishop-Holstein model which has been widely used to address charge dynamics in this macromolecule. To analyze these mechanisms we consider…

Biological Physics · Physics 2022-09-14 R. P. A. Lima , A. V. Malyshev

A tight-binding model together with a novel statistical method are used to investigate the relation between the sequence-dependent electric transport properties and the sequences of protein-coding regions of complete genomes. A correlation…

Biological Physics · Physics 2009-11-11 C. T. Shih

We investigate the voltage-driven transport of hybridized DNA through membrane channels. As membrane channels are typically too narrow to accommodate hybridized DNA, the dehybridization of the DNA is the critical rate limiting step in the…

Statistical Mechanics · Physics 2007-05-23 G. Lakatos , T. Chou , B. Bergersen , G. Patey

Graphene nanogaps and nanopores show potential for the purpose of electrical DNA sequencing, in particular because single-base resolution appears to be readily achievable. Here, we evaluated from first principles the advantages of a nanogap…

Mesoscale and Nanoscale Physics · Physics 2013-07-29 Jariyanee Prasongkit , Anton Grigoriev , Biswarup Pathak , Rajeev Ahuja , Ralph H. Scheicher

We present a model of electron transport through a random distribution of interacting quantum dots embedded in a dielectric matrix to simulate realistic devices. The method underlying the model depends only on fundamental parameters of the…

Mesoscale and Nanoscale Physics · Physics 2012-07-25 S. Illera , J. D. Prades , A. Cirera , A. Cornet

Electronic and magnetic properties of DNA structures doped by simple and transition d- and f-metal ions (Gd, La, Cu, Zn, Au) are reviewed. Both one- and two dimensional systems are considered. A particular attention is paid to gadolinium…

Biological Physics · Physics 2018-05-08 V. Yu. Irkhin , V. N. Nikiforov

Theoretical and experimental values to date for the resistances of single molecules commonly disagree by orders of magnitude. By reformulating the transport problem using boundary conditions suitable for correlated many-electron systems, we…

Condensed Matter · Physics 2007-05-23 P. Delaney , J. C. Greer
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