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In systems such as block copolymer mesophases or physical gels formed by associating copolymers, the dynamical properties are often controlled by the extraction/association of a sticking group. We propose a description of the…

Soft Condensed Matter · Physics 2009-09-25 J. P. Wittmer , A. Johner

A heterogeneous medium of constituents with vastly different mechanical properties, whose inhomogeneities are in close proximity to each other, is considered. The gradient of the solution to the corresponding problem exhibits singular…

Analysis of PDEs · Mathematics 2014-01-28 Yuliya Gorb

In our continuing attempts to understand theoretically various surface properties such as corrosion and potential catalytic activity of actinide surfaces in the presence of environmental gases, we report here the first ab initio study of…

Strongly Correlated Electrons · Physics 2015-05-14 Pratik P. Dholabhai , Raymond Atta-Fynn , Asok K. Ray

We demonstrate strong coupling between molecular excited states and surface plasmon modes of a slit array in a thin metal film. The coupling manifests itself as an anti-crossing behavior of the two newly formed polaritons. As the coupling…

Mesoscale and Nanoscale Physics · Physics 2012-08-17 Adi Salomon , Robert J. Gordon , Yehiam Prior , Tamar Seideman , Maxim Sukharev

Single-file transport, arising in quasi one-dimensional geometries where particles cannot pass each other, is characterized by the anomalous dynamics of a probe, notably its response to an external force. In these systems, the motion of…

Statistical Mechanics · Physics 2018-03-29 Olivier Bénichou , Vincent Démery , Alexis Poncet

A full understanding of transport in dense, interacting suspensions requires analysis frameworks sensitive to self and collective dynamics across all relevant spatial and temporal scales. Here we introduce a trajectory-free approach to…

Soft Condensed Matter · Physics 2025-12-22 Eleanor K. R. Mackay , Anna Drummond Young , Adam Carter , Sophie Marbach , Alice L. Thorneywork

The precessional magnetization dynamics of a chromium dioxide$(100)$ film is examined in an all-optical pump-probe setup. The frequency dependence on the external field is used to extract the uniaxial in-plane anisotropy constant. The…

Other Condensed Matter · Physics 2008-02-13 G. M. Müller , M. Münzenberg , G. -X. Miao , A. Gupta

We conduct molecular dynamics simulations of the collision of atomic clusters with a weakly-attractive surface. We focus on an intermediate regime, between soft-landing and fragmentation, where the cluster undergoes deformation on impact…

Other Condensed Matter · Physics 2007-09-29 A. Awasthi , S. C. Hendy , P. Zoontjens , S. A. Brown , F. Natali

The behavior of a strongly charged polymer adsorbed on an oppositely charged surface of low-dielectric constant is formulated by the functional integral method. By separating the translational, conformational, and fluctuational degrees of…

Soft Condensed Matter · Physics 2007-05-23 Chi-Ho Cheng , Pik-Yin Lai

We establish a framework for assessing whether the transition state location of a biopolymer, which can be inferred from single molecule pulling experiments, corresponds to the ensemble of structures that have equal probability of reaching…

Soft Condensed Matter · Physics 2015-05-27 Greg Morrison , Changbong Hyeon , Michael Hinczewski , D. Thirumalai

In recent years, single molecule force techniques have opened a new avenue to decipher the folding landscapes of biopolymers by allowing us to watch and manipulate the dynamics of individual proteins and nucleic acids. In single molecule…

Biomolecules · Quantitative Biology 2016-11-25 Changbong Hyeon

We provide a framework for studying the expansion rate of the image of a bounded set under a flow in Euclidean space and apply it to stochastic differential equations (SDEs for short) with singular coefficients. If the singular drift of the…

Probability · Mathematics 2024-04-30 Chengcheng Ling , Michael Scheutzow

Because of their small decay rates, nanomechanical modes enable studying strongly nonlinear phenomena for a moderately strong resonant driving. Here we study the response of a driven resonator to an additional probe field. We experimentally…

Mesoscale and Nanoscale Physics · Physics 2021-01-11 J. S. Ochs , M. Seitner , M. I. Dykman , E. M. Weig

The adsorption of a collagen fragment on both a hydrophobic, hydrogen-terminated and a hydrophilic, natively oxidised Si surface is investigated using all-atom molecular dynamics. While favourable direct protein-surface interactions via…

Soft Condensed Matter · Physics 2019-03-27 Daniel J. Cole , Mike C. Payne , Lucio Colombi Ciacchi

Dynamic force spectroscopy (DFS) is an experimental technique that is commonly used to assess information of the strength, energy landscape, and lifetime of noncovalent bio-molecular interactions. DFS traditionally requires an applied force…

Biological Physics · Physics 2016-07-04 Oscar Björnham , Magnus Andersson

Directly imaging structural dynamics involving hydrogen atoms by ultrafast diffraction methods is complicated by their low scattering cross-sections. Here we demonstrate that megaelectronvolt ultrafast electron diffraction is sufficiently…

The structural dynamics of a biopolymer is governed by a process of diffusion through its conformational energy landscape. In pulling experiments using optical tweezers, features of the energy landscape can be extracted from the probability…

Biological Physics · Physics 2020-07-01 Sudeep Adhikari , K. S. D. Beach

Tissues are subjected to large external forces and undergo global deformations during morphogenesis. We use synthetic analogues of tissues to study the impact of cell-cell adhesion on the response of cohesive cellular assemblies under such…

An ensemble of directed macromolecules on a lattice is considered, where the constituting molecules are chosen as a random sequence of N different types. The same type of molecules experiences a hard-core (exclusion) interaction. We study…

Biomolecules · Quantitative Biology 2009-11-10 Christopher Moseley , Klaus Ziegler

Recently experiments showed that some biological noncovalent bonds increase their lifetimes when they are stretched by an external force, and their lifetimes will decrease when the force increases further. Several specific quantitative…

Statistical Mechanics · Physics 2009-11-11 Fei Liu , Zhong-can Ou-Yang , Mitsumasa Iwamoto