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From social interactions to the human brain, higher-order networks are key to describe the underlying network geometry and topology of many complex systems. While it is well known that network structure strongly affects its function, the…

Statistical Mechanics · Physics 2022-01-11 Ana P Millán , Reza Ghorbanchian , Nicolò Defenu , Federico Battiston , Ginestra Bianconi

Accurately determining and classifying the structure of complex networks is the focus of much current research. One class of network of particular interest are metabolic pathways, which have previously been studied from a graph theoretical…

Mathematical Physics · Physics 2012-10-10 Henry Dorrian , Kieran Smallbone , Jon borresen

Exploring the structural topology of genome-based large-scale metabolic network is essential for investigating possible relations between structure and functionality. Visualization would be helpful for obtaining immediate information about…

Molecular Networks · Quantitative Biology 2007-09-06 Zhao Jing , Tao Lin , Yu Hong , Luo Jian-Hua , Z. W. Cao , Li Yixue

Many methods have been developed for finding the commonalities between different organisms to study their phylogeny. The structure of metabolic networks also reveal valuable insights into metabolic capacity of species as well as into the…

Molecular Networks · Quantitative Biology 2016-04-08 Krishanu Deyasi , Anirban Banerjee , Bony Deb

Complex networks are characterized by several topological properties: degree distribution, clustering coefficient, average shortest path length, etc. Using a simple model to generate scale-free networks embedded on geographical space, we…

Disordered Systems and Neural Networks · Physics 2013-11-20 Satoru Morita

A common feature of biological networks is the geometric property of self-similarity. Molecular regulatory networks through to circulatory systems, nervous systems, social systems and ecological trophic networks, show self-similar…

Molecular Networks · Quantitative Biology 2012-03-09 Simon DeDeo , David C. Krakauer

We study the statistical properties of the sampled scale-free networks, deeply related to the proper identification of various real-world networks. We exploit three methods of sampling and investigate the topological properties such as…

Disordered Systems and Neural Networks · Physics 2009-11-24 Sang Hoon Lee , Pan-Jun Kim , Hawoong Jeong

Several fundamental properties of real complex networks, such as the small-world effect, the scale-free degree distribution, and recently discovered topological fractal structure, have presented the possibility of a unique growth mechanism…

Data Analysis, Statistics and Probability · Physics 2009-11-13 Liuhua Zou , Wenjiang Pei , Tao Li , Zhenya He , Yiuming Cheung

The metric structure of bosonic scale-free networks and fermionic Cayley-tree networks is analyzed focousing on the directed distance of nodes from the origin. The topology of the netwoks strongly depends on the dynamical parameter $T$,…

Disordered Systems and Neural Networks · Physics 2009-11-10 Ginestra Bianconi

Network self-similarity or fractality are widely accepted as an important topological property of metabolic networks; however, recent studies cast doubt on the reality of self-similarity in the networks. Therefore, we perform a…

Molecular Networks · Quantitative Biology 2014-08-05 Kazuhiro Takemoto

Several network growth models have been proposed in the literature that attempt to incorporate properties of citation networks. Generally, these models aim at retaining the degree distribution observed in real-world networks. In this work,…

Social and Information Networks · Computer Science 2020-02-19 Dattatreya Mohapatra , Siddharth Pal , Soham De , Ponnurangam Kumaraguru , Tanmoy Chakraborty

In this paper we model the tomography of scale free networks by studying the structure of layers around an arbitrary network node. We find, both analytically and empirically, that the distance distribution of all nodes from a specific…

Condensed Matter · Physics 2013-05-29 R. Cohen , D. Dolev , S. Havlin , T. Kalisky , O. Mokryn , Y. Shavitt

In this paper we deal with the structural properties of weighted networks. Starting from an empirical analysis of a linguistic network, we analyse the differences between the statistical properties of a real and a shuffled network and we…

Data Analysis, Statistics and Probability · Physics 2009-09-07 A. P. Masucci , G. J. Rodgers

In citation networks, the activity of papers usually decreases with age and dormant papers may be discovered and become fashionable again. To model this phenomenon, a competition mechanism is suggested which incorporates two factors:…

Physics and Society · Physics 2013-08-27 Xue-Wen Wang , Li-Jie Zhang , Guo-Hong Yang , Xin-Jian Xu

The rapidly developing theory of complex networks indicates that real networks are not random, but have a highly robust large-scale architecture, governed by strict organizational principles. Here, we focus on the properties of biological…

Molecular Networks · Quantitative Biology 2007-05-23 E. Almaas , A. -L. Barabasi

A complex network is said to show topological isotropy if the topological structure around a particular node looks the same in all directions of the whole network. Topologically anisotropic networks are those where the local neighborhood…

Statistical Mechanics · Physics 2013-04-02 Ernesto Estrada

Cellular metabolic networks exhibit scale-free topologies with power-law degree distributions across diverse organisms. Although such topologies are often linked to mutational robustness and evolutionary advantage, their role in metabolic…

Statistical Mechanics · Physics 2026-03-23 Kota Mitsumoto , Shuji Ishihara

Complex networks have been studied extensively due to their relevance to many real systems as diverse as the World-Wide-Web (WWW), the Internet, energy landscapes, biological and social networks…

Disordered Systems and Neural Networks · Physics 2009-11-11 Chaoming Song , Shlomo Havlin , Hernan A. Makse

We review the recent fast progress in statistical physics of evolving networks. Interest has focused mainly on the structural properties of random complex networks in communications, biology, social sciences and economics. A number of giant…

Statistical Mechanics · Physics 2015-06-24 S. N. Dorogovtsev , J. F. F. Mendes

Connectivity correlations play an important role in the structure of scale-free networks. While several empirical studies exist, there is no general theoretical analysis that can explain the largely varying behavior of real networks. Here,…

Physics and Society · Physics 2009-11-13 Lazaros K. Gallos , Chaoming Song , Hernan A. Makse
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