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In this paper, we perform molecular dynamics (MD) simulations to study the two-dimensional packing process of both monosized and random size particles with radii ranging from $1.0 \, \mu m$ to $7.0 \, \mu m$. The system was allowed to…

Soft Condensed Matter · Physics 2017-12-01 Carlos Handrey Araujo Ferraz , Samuel Apolinário Marques

We study perfusion by a multiscale model coupling diffusion in the tissue and diffusion along the one-dimensional segments representing the vasculature. We propose a block-diagonal preconditioner for the model equations and demonstrate its…

Analysis of PDEs · Mathematics 2018-03-14 Karl Erik Holter , Miroslav Kuchta , Kent-André Mardal

Slip-spring models are valuable tools for simulating entangled polymers, bridging the gap between bead-spring models with excluded volume and network models with presumed reptation motion. This study focuses on the DPD-SS (Dissipative…

We use Molecular Dynamics combined with Dissipative Particle Dynamics to construct a model of a binary mixture where the two species differ only in their dynamic properties (friction coefficients). For an asymmetric mixture of slow and fast…

Soft Condensed Matter · Physics 2009-11-11 Jacqueline Yaneva , Burkhard Duenweg , Andrey Milchev

A driven system of three species of particle diffusing on a ring is studied in detail. The dynamics is local and conserves the three densities. A simple argument suggesting that the model should phase separate and break the translational…

Statistical Mechanics · Physics 2009-10-31 M. R. Evans , Y. Kafri , H. M. Koduvely , D. Mukamel

We study a single, motionless three-dimensional droplet growing by adsorption of diffusing monomers on a 2D substrate. The diffusing monomers are adsorbed at the aggregate perimeter of the droplet with different boundary conditions. Models…

Statistical Mechanics · Physics 2009-10-31 Z. Tavassoli , G. J. Rodgers

In this work, we study a particular system of coagulation equations characterized by two values, namely volume $v$ and surface area $a$. Compared to the standard one-dimensional models, this model incorporates additional information about…

Analysis of PDEs · Mathematics 2024-03-12 Iulia Cristian , Juan J. L. Velázquez

We study the dynamic properties of a model for wetting with two competing adsorbates on a planar substrate. The two species of particles have identical properties and repel each other. Starting with a flat interface one observes the…

Statistical Mechanics · Physics 2009-04-09 Christian Gogolin , Christian Meltzer , Marvin Willers , Haye Hinrichsen

We discuss the physical consequences of a duality between two models with quenched disorder, in which particles propagate in one dimension among random traps or across random barriers. We derive an exact relation between their diffusion…

Statistical Mechanics · Physics 2008-07-31 Robert L. Jack , Peter Sollich

The recently introduced correspondence between one-dimensional two-species driven models and the Zero-Range Process is extended to study the case where the densities of the two species need not be equal. The correspondence is formulated…

Statistical Mechanics · Physics 2009-11-10 M. R. Evans , E. Levine , P. K. Mohanty , D. Mukamel

Diffusion models have demonstrated exceptional performances in various fields of generative modeling, but suffer from slow sampling speed due to their iterative nature. While this issue is being addressed in continuous domains, discrete…

Machine Learning · Computer Science 2025-05-12 Satoshi Hayakawa , Yuhta Takida , Masaaki Imaizumi , Hiromi Wakaki , Yuki Mitsufuji

In this paper we introduce 1-$D$ and 2-$D$ discrete models for the dynamic granular matter formation process in the form of a system of difference equations. This approach allows us to differentiate between the influx of the rolling layer…

Numerical Analysis · Mathematics 2013-12-10 Alexander Khapalov , Sergey Lapin

We probe the diffusive motion of particles in slowly sheared three dimensional granular suspensions. For sufficiently large strains, the particle dynamics exhibits diffusive Gaussian statistics, with the diffusivity proportional to the…

Soft Condensed Matter · Physics 2015-06-11 Elie Wandersman , Joshua A. Dijksman , Martin van Hecke

Most methods for modelling dynamics posit just two time scales: a fast and a slow scale. But many applications, including many in continuum mechanics, possess a wide variety of space-time scales; often they possess a continuum of space-time…

Cellular Automata and Lattice Gases · Physics 2008-02-11 A. J. Roberts

One-dimensional non-equilibrium models of particles subjected to a coagulation-diffusion process are important in understanding non-equilibrium dynamics, and fluctuation-dissipation relation. We consider in this paper transport properties…

Statistical Mechanics · Physics 2015-06-18 Jean-Yves Fortin

We investigate the dynamics of two interacting diffusing particles in an infinite effectively one dimensional system; the particles interact through a step-like potential of width b and height phi_0 and are allowed to pass one another. By…

Biomolecules · Quantitative Biology 2009-11-13 Tobias Ambjornsson , Robert J. Silbey

Curse of Dimensionality is an unavoidable challenge in statistical probability models, yet diffusion models seem to overcome this limitation, achieving impressive results in high-dimensional data generation. Diffusion models assume that…

Machine Learning · Statistics 2025-10-01 Zhenxin Zheng , Zhenjie Zheng

Consider the system of particles on ${\Bbb Z}^d$ where particles are of two types, $A$ and $B$, and execute simple random walks in continuous time. Particles do not interact with their own type, but when a type $A$ particle meets a type $B$…

Mathematical Physics · Physics 2007-05-23 M. Bramson , J. L. Lebowitz

Diffusion models are capable of impressive feats of image generation with uncommon juxtapositions such as astronauts riding horses on the moon with properly placed shadows. These outputs indicate the ability to perform compositional…

Machine Learning · Computer Science 2024-05-01 Qiyao Liang , Ziming Liu , Ila Fiete

We propose a unifying theoretical framework for the analysis of first-passage time distributions in two important classes of stochastic processes in which the diffusivity of a particle evolves randomly in time. In the first class of…

Statistical Mechanics · Physics 2019-11-05 D. S. Grebenkov
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