English
Related papers

Related papers: Computer Simulations for Biological Ageing and Sex…

200 papers

The population in the sexual Penna ageing model is first separated into several reproductively isolated groups. Then, after equilibration, sexual mixing between the groups is allowed. We study the changes in the population size due to this…

Populations and Evolution · Quantitative Biology 2009-11-13 K. Bonkowska , M. Kula , S. Cebrat , D. Stauffer

A stochastic genetic model for biological aging is introduced bridging the gap between the bit-string Penna model and the Pletcher-Neuhauser approach. The phenomenon of exponentially increasing mortality function at intermediate ages and…

Statistical Mechanics · Physics 2007-05-23 Zhi-Feng Huang , Dietrich Stauffer

We have modified the sexual Penna model by introducing the fluctuating environment and fluctuations representing physiological functions of individuals. Additionally, we have introduced the mother care corresponding to the protection…

Populations and Evolution · Quantitative Biology 2008-11-04 Przemyslaw Biecek , Katarzyna Bonkowska , Stanislaw Cebrat

We modify the Penna Model for biological aging, which is based on the mutation-accumulation theory, in order to verify if there would be any evolutionary advantage of triploid over diploid organisms. We show that this is not the case, and…

Statistical Mechanics · Physics 2007-05-23 A. O. Sousa , S. Moss de Oliveira , J. S. Sa Martins

Computer simulations prove that we should spend more money on red wine than on medication. We optimise the problem of how to distribute a fixed amount of money between medication and food spendings, using the Penna ageing model.

Populations and Evolution · Quantitative Biology 2007-05-23 Ana Proykova , Dietrich Stauffer

We investigate the scaling properties of the Penna model, which has become a popular tool for the study of population dynamics and evolutionary problems in recent years. We find that the model generates a normalised age distribution for…

Populations and Evolution · Quantitative Biology 2009-11-11 E. Brigatti , J. S. Sa' Martins , I. Roditi

An asexual set of primitive bacteria is simulated with a bit-string Penna model with a Fermi function for survival. A recent hypothesis by Jan, Stauffer and Moseley on the evolution of sex from asexual cells as a strategy for trying to…

Soft Condensed Matter · Physics 2009-10-31 Bora Orcal , Erkan Tuzel , Volkan Sevim , Naeem Jan , Ayse Erzan

Biological aging is characterized by an age-dependent increase in the probability of death and by a decrease in the reproductive capacity. Individual age-dependent rates of survival and reproduction have a strong impact on population…

Populations and Evolution · Quantitative Biology 2016-02-03 Arian Šajina , Dario Riccardo Valenzano

We twice modify the Penna model for biological ageing. First we introduce back (good) mutations and a memory for them into the model. It allows us to observe an improvement of the species fitness over long time scales as well as punctuated…

Statistical Mechanics · Physics 2015-06-24 S. Moss de Oliveira , D. Stauffer , P. M. C de Oliveira , J. S. Sa Martins

In 1995 T.J.Penna introduced a simple model of biological aging. A modified Penna model has been demonstrated to exhibit behaviour of real-life systems including catastrophic senescence in salmon and a mortality plateau at advanced ages. We…

Populations and Evolution · Quantitative Biology 2007-05-23 J. B. Coe , Y. Mao

Computer simulations of the Penna ageing model suggest that already a small fraction of births with enhanced number of new mutations can negatively influence the whole population.

Populations and Evolution · Quantitative Biology 2015-05-13 S. Cebrat , D. Stauffer

We present a computer simulation, which is inspired by Penna model, to help understanding the effect of genetic coding tables on population dynamics. To represent populations we used real and artificial gene sequences in this model. We…

Populations and Evolution · Quantitative Biology 2007-07-16 E. Gultepe , M. L. Kurnaz

The possible coexistence of one host, one aggressive parasite and one non-lethal parasite is simulated using the Penna model of biological ageing. If the aggressive parasites survive the difficult initial times where they have to adjust…

Populations and Evolution · Quantitative Biology 2008-01-31 Dietrich Stauffer , Karl-Heinz Lampe

We build upon the recent steady-state Penna model solution, Phys.Rev.Lett. 89, 288103 (2002), to study the population dynamics within the Penna model. We show, that any perturbation to the population can be broken into a collection of modes…

Populations and Evolution · Quantitative Biology 2007-05-23 J. B. Coe , Y. Mao

The gradual accumulation of damage and dysregulation during the aging of living organisms can be quantified. Even so, the aging process is complex and has multiple interacting physiological scales -- from the molecular to cellular to whole…

Quantitative Methods · Quantitative Biology 2021-05-06 Spencer Farrell , Garrett Stubbings , Kenneth Rockwood , Arnold Mitnitski , Andrew Rutenberg

We perform simulations based on the Penna model for biological ageing, now with the purpose of studying sympatric speciation, that is, the division of a single species into two or more populations, reproductively isolated, but without any…

Populations and Evolution · Quantitative Biology 2007-05-23 K. Luz-Burgoa

A deterministic model of an age-structured population with genetics analogous to the discrete time Penna model of genetic evolution is constructed on the basis of the Lotka-Volterra scheme. It is shown that if, as in the Penna model,…

Populations and Evolution · Quantitative Biology 2007-05-23 Miroslaw R. Dudek

We combine the Penna Model for biological aging, which is based on the mutation-accumulation theory, with a sort of antagonistic pleiotropy. We show that depending on how the pleiotropy is introduced, it is possible to reproduce both the…

Statistical Mechanics · Physics 2009-11-07 A. O. Sousa , S. Moss de Oliveira

Background: Hybridogenesis is a very interesting example of reproduction which seems to integrate the sexual and clonal processes in one system. In a case of frogs, described in the paper, two parental species - Rana lessonae and Rana…

Genomics · Quantitative Biology 2009-03-18 Mateusz Kula , Katarzyna Bonkowska , Maria Ogielska , Piotr Kierzkowski , Anna Zalesna , Stanislaw Cebrat

The understanding of language competition helps us to predict extinction and survival of languages spoken by minorities. A simple agent-based model of a sexual population, based on the Penna model, is built in order to find out under which…

Physics and Society · Physics 2009-11-11 Veit Schwammle