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Randomly branching polymers with {\em annealed} connectivity are model systems for ring polymers and chromosomes. In this context, the branched structure represents transient folding induced by topological constraints. Here we present…

Statistical Mechanics · Physics 2016-11-03 Angelo Rosa , Ralf Everaers

We present a statistical mechanical study of stiff polymers, motivated by experiments on actin filaments and the considerable current interest in polymer networks. We obtain simple, approximate analytical forms for the force-extension…

Soft Condensed Matter · Physics 2009-11-13 Abhijit Ghosh , Joseph Samuel , Supurna Sinha

Molecular dynamics simulations are used to investigate the conformations of a single polymer chain, represented by the Kremer-Grest bead-spring model, in a solution with a Lennard-Jones liquid as the solvent when the interaction strength…

Soft Condensed Matter · Physics 2021-11-17 Yisheng Huang , Shengfeng Cheng

Cosmological simulations have been used to study interacting galaxies as a function of galaxy pair separation, enabling comparisons with observational studies of galaxy pairs. The study of interacting galaxies as a function of time (i.e.…

A brief review of modeling and simulation methods for a study of polymers at interfaces is provided. When studying truly multiscale problems as provided by realistic polymer systems, coarse graining is practically unavoidable. In this…

Soft Condensed Matter · Physics 2009-10-19 Fathollah Varnik , Kurt Binder

We elucidate the elastic behavior of a wormlike chain in 3D under compression and provide exact solutions for the experimentally accessible force-extension relation in terms of generalized spheroidal wave functions. In striking contrast to…

Soft Condensed Matter · Physics 2019-11-11 Christina Kurzthaler

Non-empirical effective contact pairing forces to be used in self-consistent mean-field calculations are presented. These pairing forces, constructed so as to reproduce exactly any given microscopic pairing gaps in infinite homogeneous…

Nuclear Theory · Physics 2010-09-21 Nicolas Chamel

The phase separation of oppositely-charged polyelectrolytes in solution is of current interest . In this work we study the driving force for polyelectrolyte complexation using molecular dynamics simulations. We calculate the potential of…

Biomolecules · Quantitative Biology 2020-01-08 Aditya N. Singh , Arun Yethiraj

Three-body effective interactions emerging between parallel cylindrical rods immersed in a nematic liquid crystals are calculated within the Landau-de Gennes free energy description. Collinear, equilateral and midplane configurations of the…

Soft Condensed Matter · Physics 2008-07-09 Mykola Tasinkevych , Denis Andrienko

We derive exact expressions for the Casimir scalar interaction energy between media-separated eccentric dielectric cylinders and for the media-separated cylinder-plane geometry using a mode-summation approach. Similarly to the…

Quantum Physics · Physics 2011-02-28 F. C. Lombardo , F. D. Mazzitelli , P. I. Villar , D. A. R. Dalvit

The scaling of the bond-bond correlation function $C(s)$ along linear polymer chains is investigated with respect to the curvilinear distance, $s$, along the flexible chain and the monomer density, $\rho$, via Monte Carlo and molecular…

Soft Condensed Matter · Physics 2009-11-10 J. P. Wittmer , H. Meyer , J. Baschnagel , A. Johner , S. Obukhov , L. Mattioni , M. Mueller , A. N. Semenov

We numerically studied active Brownian particles with attractive interactions. Contrary to our intuition, the attractive force between particles disrupts the formation of a single cluster observed in motility-induced phase separation,…

Soft Condensed Matter · Physics 2025-05-27 Sota Shimamura , Nen Saito , Shuji Ishihara

Both simulations and observations indicate that stars form in filamentary, hierarchically clustered associations, most of which disperse into their galactic field once feedback destroys their parent clouds. However, during their early…

Earth and Planetary Astrophysics · Physics 2015-06-15 Jonathan M. Craig , Mark R. Krumholz

We consider a model of star copolymers, based on self-avoiding walks, where the arms of the star can be chemically distinct. The copolymeric star is attached to an impenetrable surface at a vertex of unit degree and the different monomers…

Statistical Mechanics · Physics 2022-06-22 EJ Janse van Rensburg , SG Whittington

We have developed a simulation model to describe particle adsorption to and desorption from liquid interfaces. Using this model we formulate a closed interfacial equation of state for repulsive elastic spheres. The effect of a long-range…

Soft Condensed Matter · Physics 2011-02-24 Robert D. Groot , Simeon D. Stoyanov

Comparisons between observed and predicted strong lensing properties of galaxy clusters have been routinely used to claim either tension or consistency with $\Lambda$CDM cosmology. However, standard approaches to such cosmological tests are…

We carried out a statistical analysis of galaxy pairs in hydrodynamical Lambda-CDM simulations. We focused on the triggering of star formation by interactions and analysed the enhancement of star formation activity in terms of orbital…

Astrophysics · Physics 2016-08-30 M. Josefa Perez , Patricia B. Tissera , Diego G. Lambas , Cecilia Scannapieco

We investigate the anomalous dynamics of unentangled polymer melts. The proposed equation of motion formally relates the anomalous center-of-mass diffusion, as observed in computer simulations and experiments, to the nature of the effective…

Statistical Mechanics · Physics 2009-11-07 M. Guenza

The friction force on a test particle traveling through a plasma that is both strongly coupled and strongly magnetized is studied using molecular dynamics simulations. In addition to the usual stopping power component aligned antiparallel…

Plasma Physics · Physics 2021-06-16 David J. Bernstein , Scott D. Baalrud

Large scale molecular dynamics simulations are used to study the dispersion of nanoparticles (NPs) in a polymer film during solvent evaporation. As the solvent evaporates, a dense polymer-rich skin layer forms at the liquid/vapor interface,…

Soft Condensed Matter · Physics 2016-05-23 Shengfeng Cheng , Gary S. Grest