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One of the most intriguing results of single molecule experiments on proteins and nucleic acids is the discovery of functional heterogeneity: the observation that complex cellular machines exhibit multiple, biologically active…

Biomolecules · Quantitative Biology 2022-10-12 Michael Hinczewski , Changbong Hyeon , D. Thirumalai

Network fluids are structured fluids consisting of chains and branches. They are characterized by unusual physical properties, such as, exotic bulk phase diagrams, interfacial roughening and wetting transitions, and equilibrium and…

Soft Condensed Matter · Physics 2017-09-20 C. S. Dias , N. A. M. Araújo , M. M. Telo da Gama

Nonlinear fluctuating hydrodynamics (NFHD) is a powerful framework for understanding transport, but checking its validity with molecular dynamics is still challenging. Here, we overcome this challenge by developing an effective scheme for…

Statistical Mechanics · Physics 2020-05-22 Daxing Xiong

The present manuscript revisits one of the earliest approaches to treating molecular systems within the Schr\"odinger formalism of quantum mechanics: the Heitler-London (HL) model. Originally proposed in 1927 and based on a linear…

Chemical Physics · Physics 2025-11-12 Washington P. da Silva , Daniel Vieira , Jonas Maziero , Edgard P. M. Amorim

Liquid water, besides being fundamental for life on Earth, has long fascinated scientists due to several anomalies. Different hypotheses have been put forward to explain these peculiarities. The most accredited one foresees the presence in…

Numerical Analysis · Mathematics 2022-10-26 Michele Benzi , Isabella Daidone , Chiara Faccio , Laura Zanetti-Polzi

Liquids in equilibrium exhibit two types of disorder, simple and complex. Typical simple disorder liquid are liquid nitrogen, or weakly polar liquids. Complex liquids concern those who can form long lived local assemblies, and cover a large…

Chemical Physics · Physics 2023-06-02 Bernarda Lovrinčević , Martina Požar , Ivo Jukić , David Perera , Aurélien Perera

Thermodynamics, introduced over two centuries ago, remains foundational to our understanding of physical, chemical, biological, and engineering systems. Its principles are traditionally grounded in the statistical mechanics framework, which…

Chemical Physics · Physics 2025-06-30 Małgorzata J. Zimoń , Fausto Martelli

Nonlinear phenomena including multiple equilibria and spontaneous oscillations are common in fluid networks containing either multiple phases or constituent flows. In many systems, such behavior might be attributed to the complicated…

Dynamical Systems · Mathematics 2013-06-26 Nathaniel J. Karst , Brian D. Storey , John B. Geddes

Hydrogen's growing role in the transition towards climate-neutral energy systems necessitates structured modeling frameworks. Existing gas network models, largely developed for natural gas, fail to capture hydrogen systems distinct…

Optimization and Control · Mathematics 2025-12-03 Abdullah Shahin , Hannes Gernandt , Anton Plietzsch , Johannes Schiffer

Fluid discontinuities, such as shock fronts and vortex sheets, can reflect waves and become unstable to corrugation. Analytical calculations of these phenomena are tractable in the simplest cases only, while their numerical simulations are…

Plasma Physics · Physics 2023-08-16 William Béthune

2D-Raman-THz spectroscopy of liquid water, which has been presented recently (Proc. Natl. Acad. Sci. USA 110, 20402 (2013)), directly probes the intermolecular degrees of freedom of the hydrogen-bond network. However, being a relatively new…

Chemical Physics · Physics 2019-02-20 David Sidler , Peter Hamm

Disordered hyperuniform structures are locally random while uniform like crystals at large length scales. Recently, an exotic hyperuniform fluid state was found in several non-equilibrium systems, while the underlying physics remains…

Soft Condensed Matter · Physics 2019-11-14 Qunli Lei , Ran Ni

Warm absorbers and related phenomena are one of the observable manifestations of outflows or winds from active galactic nuclei (AGN). Warm absorbers are common in low luminosity AGN, they have been extensively studied observationally, and…

High Energy Astrophysical Phenomena · Physics 2019-11-06 T. Kallman , A. Dorodnitsyn

We summarise basic properties of MHD turbulence. First, MHD turbulence is not so messy as it is believed. In fact, the notion of strong non-linear coupling of compressible and incompressible motions along MHD cascade is not tenable. Alfven,…

Astrophysics · Physics 2007-05-23 A. Lazarian , A. Beresnyak

The dynamic structure factor and the eigenmodes of density fluctuations in the uniform liquid $^3$He are studied using a novel non-perturbative approach. This new version of the self-consistent method of moments invokes up to nine sum rules…

Computational Physics · Physics 2023-11-10 A. V. Filinov , J. Ara , I. M. Tkachenko

We use accurate first principles methods to study the network dynamics of hydrogenated amorphous silicon, including the motion of hydrogen. In addition to studies of atomic dynamics in the electronic ground state, we also adopt a simple…

Materials Science · Physics 2009-11-11 T. A. Abtew , D. A. Drabold

Static analysis (aka offline analysis) of a model of an IP network is useful for understanding, debugging, and verifying packet flow properties of the network. There have been static analysis approaches proposed in the literature for…

Networking and Internet Architecture · Computer Science 2011-11-30 Raghavan Komondoor , K. Vasanta Lakshmi , Deva P. Seetharam , Sudha Balodia

Ionic liquids (ILs) feature a tailorable and wide range of structural, chemical and electronic properties that make this class of materials suitable to a broad variety of forefront applications in next-generation electronics. Yet, their…

Materials Science · Physics 2022-11-28 Irene Amiehe Essomba , Mauro Boero , Kerstin Falk , Guido Ori

Investigation of inhomogeneities has wide applications in different areas of mechanics including the study of composite materials. Here, we analytically study an arbitrarily-shaped isotropic inhomogeneity embedded in a finite-sized…

Soft Condensed Matter · Physics 2018-11-20 Ehsan Ban

Fluids under extreme confinement exhibit unique structures and intermolecular bonding, distinct from their bulk analogs, driving innovative applications at the water-energy nexus. Probing confined water experimentally at the length scale of…