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Fast Multipole Methods (FMM) are a fundamental operation for the simulation of many physical problems. The high performance design of such methods usually requires to carefully tune the algorithm for both the targeted physics and the…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-06-04 Emmanuel Agullo , Béranger Bramas , Olivier Coulaud , Eric Darve , Matthias Messner , Takahashi Toru

Previous work has shown that there are two major complexity barriers in the synthesis of fault-tolerant distributed programs: (1) generation of fault-span, the set of states reachable in the presence of faults, and (2) resolving deadlock…

Distributed, Parallel, and Cluster Computing · Computer Science 2009-12-15 Fuad Abujarad , Borzoo Bonakdarpour , Sandeep S. Kulkarni

This paper investigates the execution of tree-shaped task graphs using multiple processors. Each edge of such a tree represents a large IO file. A task can only be executed if all input and output files fit into memory, and a file can only…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-10-10 Loris Marchal , Oliver Sinnen , Frédéric Vivien

We report on an experimental investigation into opportunities for parallelism in beliefnet inference. Specifically, we report on a study performed of the available parallelism, on hypercube style machines, of a set of randomly generated…

Artificial Intelligence · Computer Science 2013-03-25 Bruce D'Ambrosio , Tony Fountain , Zhaoyu Li

In this paper we present FASE (Fast Asynchronous Systems Evaluation), a tool for evaluating worst-case efficiency of asynchronous systems. This tool implements some well-established results in the setting of a timed CCS-like process…

Logic in Computer Science · Computer Science 2011-05-10 Massimo Callisto De Donato , Maria Rita Di Berardini

Hybrid computational architectures based on the joint power of Central Processing Units and Graphic Processing Units (GPUs) are becoming popular and powerful hardware tools for a wide range of simulations in biology, chemistry, engineering,…

Instrumentation and Methods for Astrophysics · Physics 2015-06-15 Roberto Capuzzo-Dolcetta , Mario Spera

Speculative decoding is a technique to leverage hardware concurrency in order to enable multiple steps of token generation in a single forward pass, thus improving the efficiency of large-scale autoregressive (AR) Transformer models.…

Machine Learning · Computer Science 2025-10-29 Yangchao Wu , Zongyue Qin , Alex Wong , Stefano Soatto

Combinational equivalence checking (CEC) remains a challenge EDA task in the formal verification of datapath circuits due to their complex arithmetic structures and the limited capability or scalability of SAT, BDD, and exact-simulation…

Logic in Computer Science · Computer Science 2025-12-09 Xindi Zhang , Furong Ye , Zhihan Chen , Shaowei Cai

Modern graphics processing units (GPUs) lead to a major increase in the performance of the computation of astrophysical simulations. Owing to the different nature of GPU architecture compared to traditional central processing units (CPUs)…

Earth and Planetary Astrophysics · Physics 2016-04-13 Christoph M. Schäfer , Sven Riecker , Thomas I. Maindl , Roland Speith , Samuel Scherrer , Wilhelm Kley

Multidimensional nucleosynthesis studies with hundreds of nuclei linked through thousands of nuclear processes are still computationally prohibitive. To date, most nucleosynthesis studies rely either on hydrostatic/hydrodynamic simulations…

Solar and Stellar Astrophysics · Physics 2018-11-26 David Martin , Jordi Jose , Richard Longland

We present the multi-GPU realization of the StePS (Stereographically Projected Cosmological Simulations) algorithm with MPI-OpenMP-CUDA hybrid parallelization and nearly ideal scale-out to multiple compute nodes. Our new zoom-in…

Cosmology and Nongalactic Astrophysics · Physics 2019-03-22 Gábor Rácz , István Szapudi , László Dobos , István Csabai , Alexander S. Szalay

We present a detailed analysis of the error budget for the TreePM method for doing cosmological N-Body simulations. It is shown that the choice of filter for splitting the inverse square force into short and long range components suggested…

Astrophysics · Physics 2009-11-07 J. S. Bagla , Suryadeep Ray

Many algorithms have been parallelized successfully on the Intel Xeon Phi coprocessor, especially those with regular, balanced, and predictable data access patterns and instruction flows. Irregular and unbalanced algorithms are harder to…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-07-17 S. Ali Mirsoleimani , Aske Plaat , Jaap van den Herik , Jos Vermaseren

BFS (Breadth-First Search) is a typical graph algorithm used as a key component of many graph applications. However, current distributed parallel BFS implementations suffer from irregular data communication with large volumes of transfers…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-08-18 Xinbiao Gan

Interest in many-core architectures applied to real time selections is growing in High Energy Physics (HEP) experiments. In this paper we describe performance measurements of many-core devices when applied to a typical HEP online task: the…

Instrumentation and Detectors · Physics 2014-11-25 A. Gianelle , S. Amerio , D. Bastieri , M. Corvo , W. Ketchum , T. Liu , A. Lonardo , D. Lucchesi , S. Poprocki , R. Rivera , L. Tosoratto , P. Vicini , P. Wittich

We describe a method for fast approximation of sparse coding. The input space is subdivided by a binary decision tree, and we simultaneously learn a dictionary and assignment of allowed dictionary elements for each leaf of the tree. We…

Computer Vision and Pattern Recognition · Computer Science 2015-06-09 Arthur Szlam , Karol Gregor , Yann LeCun

Cosmological N-body simulations rank among the most computationally intensive efforts today. A key challenge is the analysis of structure, substructure, and the merger history for many billions of compact particle clusters, called halos.…

Cosmology and Nongalactic Astrophysics · Physics 2020-08-20 Esteban Rangel , Nicholas Frontiere , Salman Habib , Katrin Heitmann , Wei-keng Liao , Ankit Agrawal , Alok Choudhary

In this paper we implement an n-ary Huffman Encoding and Decoding application using different degrees of tree structures. Our goal is to compare the performance of the algorithm in terms of compression ratio, decompression speed and…

Information Theory · Computer Science 2021-05-18 Ioannis S. Xezonakis , Svoronos Leivadaros

Computer simulation with Monte Carlo is an important tool to investigate the function and equilibrium properties of many systems with biological and soft matter materials solvable in solvents. The appropriate treatment of long-range…

Computational Physics · Physics 2015-06-15 Zecheng Gan , Zhenli Xu

We have developed a special-purpose computer for gravitational many-body simulations, GRAPE-5. GRAPE-5 is the successor of GRAPE-3. Both consist of eight custom pipeline chips (G5 chip and GRAPE chip). The difference between GRAPE-5 and…

Astrophysics · Physics 2015-06-24 Atsushi Kawai , Toshiyuki Fukushige , Junichiro Makino , Makoto Taiji