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We introduce a simple algorithm for reconstructing phylogenies from multiple gene trees in the presence of incomplete lineage sorting, that is, when the topology of the gene trees may differ from that of the species tree. We show that our…

Populations and Evolution · Quantitative Biology 2011-09-30 Elchanan Mossel , Sebastien Roch

Machine learning has an emerging critical role in high-performance computing to modulate simulations, extract knowledge from massive data, and replace numerical models with efficient approximations. Decision forests are a critical tool…

Performance · Computer Science 2018-06-22 James Browne , Tyler M. Tomita , Disa Mhembere , Randal Burns , Joshua T. Vogelstein

We introduce a decision scheme for optimally choosing a classifier, which segments the cosmic web into different structure types (voids, sheets, filaments, and clusters). Our framework, based on information theory, accounts for the design…

Cosmology and Nongalactic Astrophysics · Physics 2016-08-22 Florent Leclercq , Guilhem Lavaux , Jens Jasche , Benjamin Wandelt

This paper explores the application of machine learning methods for classifying astronomical sources using photometric data, including normal and emission line galaxies (ELGs; starforming, starburst, AGN, broad line), quasars, and stars. We…

Many classification applications require accurate probability estimates in addition to good class separation but often classifiers are designed focusing only on the latter. Calibration is the process of improving probability estimates by…

Machine Learning · Computer Science 2020-01-31 Tuomo Alasalmi , Jaakko Suutala , Heli Koskimäki , Juha Röning

We present a technique for clustering categorical data by generating many dissimilarity matrices and averaging over them. We begin by demonstrating our technique on low dimensional categorical data and comparing it to several other…

Machine Learning · Statistics 2017-09-20 Saeid Amiri , Bertrand Clarke , Jennifer Clarke

In tabular prediction tasks, tree-based models combined with automated feature engineering methods often outperform deep learning approaches that rely on learned representations. While these feature engineering techniques are effective,…

Machine Learning · Computer Science 2024-11-19 Jaehyun Nam , Kyuyoung Kim , Seunghyuk Oh , Jihoon Tack , Jaehyung Kim , Jinwoo Shin

It has been known for a long time that stratification is one possible strategy to obtain higher convergence rates for the Monte Carlo estimation of integrals over the hyper-cube $[0, 1]^s$ of dimension $s$. However, stratified estimators…

Computation · Statistics 2025-01-10 Nicolas Chopin , Hejin Wang , Mathieu Gerber

Ren et al. recently introduced a method for aggregating multiple decision trees into a strong predictor by interpreting a path taken by a sample down each tree as a binary vector and performing linear regression on top of these vectors…

Computer Vision and Pattern Recognition · Computer Science 2018-09-05 Nenad Markuš , Ivan Gogić , Igor S. Pandžić , Jörgen Ahlberg

The problem of inferring an inductive invariant for verifying program safety can be formulated in terms of binary classification. This is a standard problem in machine learning: given a sample of good and bad points, one is asked to find a…

Programming Languages · Computer Science 2015-01-21 Siddharth Krishna , Christian Puhrsch , Thomas Wies

The categorical distribution is a natural representation of uncertainty in multi-class segmentations. In the two-class case the categorical distribution reduces to the Bernoulli distribution, for which grayscale morphology provides a range…

Computer Vision and Pattern Recognition · Computer Science 2022-01-11 Silas Nyboe Ørting , Hans Jacob Teglbjærg Stephensen , Jon Sporring

Most decision tree induction algorithms are based on a greedy top-down recursive partitioning strategy for tree growth. In this paper, we propose several methods for induction of decision trees and their ensembles based on evolutionary…

Neural and Evolutionary Computing · Computer Science 2020-02-04 Evgeny Dolotov , Nikolai Zolotykh

Even though it is well known that for most relevant computational problems different algorithms may perform better on different classes of problem instances, most researchers still focus on determining a single best algorithmic…

We study the problem of multiclass classification with an extremely large number of classes (k), with the goal of obtaining train and test time complexity logarithmic in the number of classes. We develop top-down tree construction…

Machine Learning · Computer Science 2015-11-17 Anna Choromanska , John Langford

In this paper, we study three algorithmic problems involving computation trees: the optimization, solvability, and satisfiability problems. The solvability problem is concerned with recognizing computation trees that solve problems. The…

Logic in Computer Science · Computer Science 2025-01-06 Mikhail Moshkov

Recent years have seen a surge in research on deep interpretable neural networks with decision trees as one of the most commonly incorporated tools. There are at least three advantages of using decision trees over logistic regression…

Machine Learning · Computer Science 2025-06-30 Łukasz Struski , Tomasz Danel , Marek Śmieja , Jacek Tabor , Bartosz Zieliński

Pattern recognition techniques have been used with increasing success for coping with the tremendous amounts of data being generated by automated surveys. Usually this process involves construction of training sets, the typical examples of…

Astrophysics · Physics 2009-11-11 D. D. Proctor

Making mock simulated catalogs is an important component of astrophysical data analysis. Selection criteria for observed astronomical objects are often too complicated to be derived from first principles. However the existence of an…

Cosmology and Nongalactic Astrophysics · Physics 2015-06-22 Amir Hajian , Marcelo Alvarez , J. Richard Bond

Galactic rotation curves are crucial for understanding the distribution of mass in galaxies. Despite advances in precision observations, there are discrepancies between the inferred mass from luminosity and the observed rotational…

Astrophysics of Galaxies · Physics 2026-02-05 Gabriela Garcia-Arroyo , Isidro Gómez-Vargas , J. Alberto Vázquez

We are totally immersed in the Big Data era and reliable algorithms and methods for data classification are instrumental for astronomical research. Random Forest and Support Vector Machines algorithms have become popular over the last few…

Solar and Stellar Astrophysics · Physics 2018-07-18 L. Beitia-Antero , J. Yáñez , A. I. Gómez de Castro