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Molecular docking, a key technique in structure-based drug design, plays pivotal roles in protein-ligand interaction modeling, hit identification and optimization, in which accurate prediction of protein-ligand binding mode is essential.…

Biomolecules · Quantitative Biology 2023-12-20 Jintao Zhu , Zhonghui Gu , Jianfeng Pei , Luhua Lai

The emerging trend of deploying complex algorithms, such as Deep Neural Networks (DNNs), increasingly poses strict memory and energy efficiency requirements on Internet-of-Things (IoT) end-nodes. Mixed-precision quantization has been…

Real-time systems, particularly those used in domains like automated driving, are increasingly adopting neural networks. From this trend arises the need for high-performance hardware exhibiting predictable timing behavior. While…

Hardware Architecture · Computer Science 2026-02-26 Maximilian Kirschner , Konstantin Dudzik , Ben Krusekamp , Jürgen Becker

Fitting multi-exponential models to Diffusion MRI (dMRI) data has always been challenging due to various underlying complexities. In this work, we introduce a novel and robust fitting framework for the standard two-compartment IVIM…

Density functional theory (DFT) remains the most widely used electronic structure method. Although exact in principle, in practice, it relies on approximations to the exchange-correlation (XC) functional, which is known to be a unique…

Computational Physics · Physics 2025-10-14 Vishal Subramanian , Bikash Kanungo , Vikram Gavini

By linking widely separated radio dishes, the technique of very long baseline interferometry (VLBI) can greatly enhance angular resolution in radio astronomy. However, at any given moment, a VLBI array only sparsely samples the information…

We describe a methodology for designing efficient parallel and distributed scientific software. This methodology utilizes sequences of mechanizable algebra--based optimizing transformations. In this study, we apply our methodology to the…

Software Engineering · Computer Science 2008-11-18 Harry B. Hunt , Lenore R. Mullin , Daniel J. Rosenkrantz , James E. Raynolds

As a big data application, extreme multilabel classification has emerged as an important research topic with applications in ranking and recommendation of products and items. A scalable hybrid distributed and shared memory implementation of…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-21 Pawan Kumar

The recent exponential growth of Large Language Models (LLMs) has relied on GPU-based systems. However, CPUs are emerging as a flexible and lower-cost alternative, especially when targeting inference and reasoning workloads. RISC-V is…

Machine Learning · Computer Science 2025-03-25 Javier J. Poveda Rodrigo , Mohamed Amine Ahmdi , Alessio Burrello , Daniele Jahier Pagliari , Luca Benini

The work describes a system for converting VLBI observation data using the algorithms of coherent dedispersion and compensation of two-bit signal sampling. Coherent dedispersion is important for processing pulsar observations to obtain the…

Instrumentation and Methods for Astrophysics · Physics 2023-03-31 Girin I. A. , Likhachev S. F. , Andrianov A. S. , Burgin M. S. , Popov M. V. , Rudnitskiy A. G. , Soglasnov V. A. , Zuga V. A

With the rapid advancement of machine learning techniques for materials simulations, machine-learned force fields (MLFFs) have become a powerful tool that complements first-principles calculations by enabling high-accuracy molecular…

Materials Science · Physics 2026-01-16 Zicun Li , Huanjing Gong , Ruijuan Xiao , Xinguo Ren

Systolic arrays and shared-L1-memory manycore clusters are commonly used architectural paradigms that offer different trade-offs to accelerate parallel workloads. While the first excel with regular dataflow at the cost of rigid…

Hardware Architecture · Computer Science 2024-04-25 Sergio Mazzola , Samuel Riedel , Luca Benini

Existing methods for bulk loading disk-based multidimensional points involve multiple applications of external sorting. In this paper, we propose techniques that apply linear scan, and are therefore significantly faster. The resulting FMBI…

Databases · Computer Science 2024-09-17 Moin Hussain Moti , Dimitris Papadias

Adding VLBI capability to the SKA arrays will greatly broaden the science of the SKA, and is feasible within the current specifications. SKA-VLBI can be initially implemented by providing phased-array outputs for SKA1-MID and SKA1-SUR and…

Deep Learning Recommendation Models (DLRMs) have become increasingly popular and prevalent in today's datacenters, consuming most of the AI inference cycles. The performance of DLRMs is heavily influenced by available bandwidth due to their…

A software package, called DFTBaby, is published, which provides the electronic structure needed for running non-adiabatic molecular dynamics simulations at the level of charge-consistent tight-binding DFT. A long-range correction is…

Chemical Physics · Physics 2017-10-25 Alexander Humeniuk , Roland Mitric

Deep learning (DL) models have become core modules for many applications. However, deploying these models without careful performance benchmarking that considers both hardware and software's impact often leads to poor service and costly…

Machine Learning · Computer Science 2021-01-06 Huaizheng Zhang , Yizheng Huang , Yonggang Wen , Jianxiong Yin , Kyle Guan

Atmospheric propagation errors are a main constraint on the accuracy of Very Long Baseline Interferometry (VLBI) astrometry. For relative astrometry, differential techniques can mitigate these errors, but their effectiveness diminishes with…

Instrumentation and Methods for Astrophysics · Physics 2025-05-26 Jingdong Zhang , Bo Zhang , Shuangjing Xu , Maria J. Rioja , Richard Dodson , Xiaofeng Mai , Oleg Titov

We have been developing a novel interferometer formed directly between a Very Long Baseline Interferometry (VLBI) radio telescope and a Global Navigation Satellite Systems (GNSS) antenna/receiver. This interferometer is enabled by the High…

This paper presents the third extension to the Very Large Baseline Array (VLBA) Calibrator Survey, containing 360 new sources not previously observed with very long baseline interferometry (VLBI). The survey, based on three 24 hour VLBA…

Astrophysics · Physics 2011-07-18 L. Petrov , Y. Y. Kovalev , E. Fomalont , D. Gordon
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