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We present a new hybrid paradigm for parallel adaptive mesh refinement (AMR) that combines the scalability and lightweight architecture of tree-based AMR with the computational efficiency of patch-based solvers for hyperbolic conservation…

Mathematical Software · Computer Science 2014-06-06 Carsten Burstedde , Donna Calhoun , Kyle Mandli , Andy R. Terrel

In this paper we study the problem of divergence-free numerical MHD and show that the work done so far still has four key unresolved issues. We resolve those issues in this paper. The problem of reconstructing MHD flow variables with…

Astrophysics · Physics 2009-11-10 Dinshaw Balsara

A numerical algorithm for solving mantle convection problems with strongly variable viscosity is presented. Equations for conservation of mass and momentum for highly viscous and incompressible fluids are solved iteratively by a multigrid…

Geophysics · Physics 2009-11-10 Masanori Kameyama , Akira Kageyama , Tetsuya Sato

A method for adaptive model order reduction for nonsmooth discrete element simulation is developed and analysed in numerical experiments. Regions of the granular media that collectively move as rigid bodies are substituted with rigid bodies…

Computational Physics · Physics 2015-12-02 Martin Servin , Da Wang

Numerical models of the flow and wakes due to turbines operating within a real-scale offshore wind farm can lead to a prohibitively large computational cost, particularly when considering blade-resolved simulations. With the introduction of…

Fluid Dynamics · Physics 2018-12-07 Georgios Deskos , Matthew D. Piggott

An implicit neural representation (INR) is a neural network that approximates a spatiotemporal function. Many memory-intensive visualization tasks, including modern 4D CT scanning methods, represent data natively as INRs. While INRs are…

Machine Learning · Computer Science 2025-12-03 Jennifer Zvonek , Andrew Gillette

Today's scientific simulations require significant data volume reduction because of the enormous amounts of data produced and the limited I/O bandwidth and storage space. Error-bounded lossy compression has been considered one of the most…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-12-07 Daoce Wang , Jesus Pulido , Pascal Grosset , Sian Jin , Jiannan Tian , Kai Zhao , James Ahrens , Dingwen Tao

The averaged alternating modified reflections (AAMR) method is a projection algorithm for finding the closest point in the intersection of convex sets to any arbitrary point in a Hilbert space. This method can be seen as an adequate…

Optimization and Control · Mathematics 2018-09-27 Francisco J. Aragón Artacho , Rubén Campoy

Numerical simulations of flow and transport in porous media usually rely on hybrid-dimensional models, i.e., the fracture is considered as objects of a lower dimension compared to the embedding matrix. Such models are usually combined with…

Numerical Analysis · Mathematics 2020-11-18 Maria Giuseppina Chiara Nestola , Marco Favino

Computational Fluid Dynamics (CFD) is a major sub-field of engineering. Corresponding flow simulations are typically characterized by heavy computational resource requirements. Often, very fine and complex meshes are required to resolve…

Machine Learning · Computer Science 2021-02-26 Keefe Huang , Moritz Krügener , Alistair Brown , Friedrich Menhorn , Hans-Joachim Bungartz , Dirk Hartmann

We consider within a finite element approach the usage of different adaptively refined meshes for different variables in systems of nonlinear, time-depended PDEs. To resolve different solution behaviours of these variables, the meshes can…

Numerical Analysis · Mathematics 2010-05-27 Thomas Witkowski , Axel Voigt

We present a new adaptive resolution technique for efficient particle-based multiscale molecular dynamics (MD) simulations. The presented approach is tailor-made for molecular systems where atomistic resolution is required only in spatially…

Soft Condensed Matter · Physics 2007-05-23 Matej Praprotnik , Luigi Delle Site , Kurt Kremer

A new numerical code, called SFUMATO, for solving self-gravitational magnetohydrodynamics (MHD) problems using adaptive mesh refinement (AMR) is presented. A block-structured grid is adopted as the grid of the AMR hierarchy. The total…

Astrophysics · Physics 2015-06-24 Tomoaki Matsumoto

Algebraic Multigrid (AMG) methods are state-of-the-art algebraic solvers for partial differential equations. Still, their efficiency depends heavily on the choice of suitable parameters and/or ingredients. Paradigmatic examples include the…

Numerical Analysis · Mathematics 2026-01-01 Paola F. Antonietti , Matteo Caldana , Lorenzo Gentile , Marco Verani

We present a novel energy-based numerical analysis of semilinear diffusion-reaction boundary value problems. Based on a suitable variational setting, the proposed computational scheme can be seen as an energy minimisation approach. More…

Numerical Analysis · Mathematics 2022-02-16 Mario Amrein , Pascal Heid , Thomas P. Wihler

This paper studies efficient distributed optimization methods for multi-agent networks. Specifically, we consider a convex optimization problem with a globally coupled linear equality constraint and local polyhedra constraints, and develop…

Systems and Control · Computer Science 2016-11-15 Tsung-Hui Chang

A computational technique has been developed to perform compressible flow simulations involving moving boundaries using an embedded boundary approach within the block-structured adaptive mesh refinement framework of AMReX. A conservative,…

Fluid Dynamics · Physics 2022-07-13 Mahesh Natarajan , Ray Grout , Weiqun Zhang , Marc Day

Atomistic simulations with methods such as molecular dynamics are extremely powerful tools to understand nanoscale dynamical behavior. The resulting trajectories, by the virtue of being embedded in a high-dimensional configuration space,…

Statistical Mechanics · Physics 2020-08-27 Animesh Agarwal , Sandrasegaram Gnanakaran , Nicholas Hengartner , Arthur F. Voter , Danny Perez

This paper presents a hybrid optimization methodology for parameter estimation of reactive transport systems. Using reduced-order advection-diffusion-reaction (ADR) models, the computational requirements of global optimization with dynamic…

Optimization and Control · Mathematics 2025-12-16 Marcus Johan Schytt , Halldór Gauti Pétursson , John Bagterp Jørgensen

We present a dual-resolution molecular dynamics (MD) simulation of liquid water employing a recently introduced Adaptive Resolution Scheme (AdResS). The spatially adaptive molecular resolution procedure allows for changing from a…

Soft Condensed Matter · Physics 2011-11-10 Silvina Matysiak , Cecilia Clementi , Matej Praprotnik , Kurt Kremer , Luigi Delle Site