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We present an implementation of Smoothed Particle Hydrodynamics (SPH) in an adaptive-mesh PPPM algorithm. The code evolves a mixture of purely gravitational particles and gas particles. The code retains the desirable properties of previous…

Astrophysics · Physics 2009-10-22 H. M. P. Couchman , P. A. Thomas , F. R. Pearce

Since its emergence, SARS-CoV-2 has demonstrated a rapid and unpredictable evolutionary trajectory, characterized by the continual emergence of immune-evasive variants. This poses persistent challenges to public health and vaccine…

Machine Learning · Computer Science 2025-11-07 Xu Zou

The progressive hedging algorithm (PHA) is a cornerstone among algorithms for large-scale stochastic programming problems. However, its traditional implementation is hindered by some limitations, including the requirement to solve all…

Optimization and Control · Mathematics 2025-03-13 Di Zhang , Yihang Zhang , Suvrajeet Sen

The goal of this paper is twofold. First, it explores hybrid evolutionary-swarm metaheuristics that combine the features of PSO and GA in a sequential, parallel and consecutive manner in comparison with their standard basic form: Genetic…

Neural and Evolutionary Computing · Computer Science 2025-08-04 Piotr Urbańczyk , Aleksandra Urbańczyk , Magdalena Król , Leszek Rutkowski , Marek Kisiel-Dorohinicki

We studied the long-term dynamics of evolutionary Swarm Chemistry by extending the simulation length ten-fold compared to earlier work and by developing and using a new automated object harvesting method. Both macroscopic dynamics and…

Adaptation and Self-Organizing Systems · Physics 2018-06-05 Hiroki Sayama

Finding the exact close neighbors of each fluid element in mesh-free computational hydrodynamical methods, such as the Smoothed Particle Hydrodynamics (SPH), often becomes a main bottleneck for scaling their performance beyond a few million…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-19 Aurélien Cavelan , Rubén M. Cabezón , Jonas H. M. Korndorfer , Florina M. Ciorba

Production of open and hidden charm hadrons in heavy ion collisions is considered within the statistical coalescence model. Charmed quarks and antiquarks are assumed to be created at the initial stage of the reaction and their number is…

High Energy Physics - Phenomenology · Physics 2008-11-26 A. P. Kostyuk

Evolving swarm behaviors with artificial agents is computationally expensive and challenging. Because reward structures are often sparse in swarm problems, only a few simulations among hundreds evolve successful swarm behaviors.…

Neural and Evolutionary Computing · Computer Science 2022-03-30 Aadesh Neupane , Michael A. Goodrich

We describe numerical methods for incorporating gas dynamics into cosmological simulations and present illustrative applications to the cold dark matter (CDM) scenario. Our evolution code, a version of TreeSPH (Hernquist \& Katz 1989)…

Astrophysics · Physics 2011-08-31 Neal Katz , David H. Weinberg , Lars Hernquist

In this paper we present CRASH_alpha, the first radiative transfer code for cosmological application that follows the parallel propagation of Ly_alpha and ionizing photons. CRASH_alpha is a version of the continuum radiative transfer code…

Astrophysics · Physics 2007-12-10 M. Pierleoni , A. Maselli , B. Ciardi

In last decades optimization and control of complex systems that possessed various conflicted objectives simultaneously attracted an incremental interest of scientists. This is because of the vast applications of these systems in various…

Neural and Evolutionary Computing · Computer Science 2013-12-17 Ahmad Mozaffari , Alireza Fathi

Algorithms for deriving Huffman codes and the recently developed algorithm for compiling PIFO trees to trees of fixed shape (Mohan et al. 2022) are similar, but work with different underlying algebraic operations. In this paper, we exploit…

Information Theory · Computer Science 2023-01-10 Keri D'Angelo , Dexter Kozen

There is an increasing level of interest in open-endedness in the recent literature of Artificial Life and Artificial Intelligence. We previously proposed the cardinality leap of possibility spaces as a promising mechanism to facilitate…

Neural and Evolutionary Computing · Computer Science 2025-02-05 Hiroki Sayama

We frame code generation as a black-box optimization problem within the code space and demonstrate how optimization-inspired techniques can enhance inference scaling. Based on this perspective, we propose SCATTERED FOREST SEARCH (SFS), a…

Software Engineering · Computer Science 2025-02-26 Jonathan Light , Yue Wu , Yiyou Sun , Wenchao Yu , Yanchi liu , Xujiang Zhao , Ziniu Hu , Haifeng Chen , Wei Cheng

SLE(kappa; rho), a generalization of chordal Schramm-L\"owner evolution (SLE), is discussed from the point of view of statistical mechanics and conformal field theory (CFT). Certain ratios of CFT correlation functions are shown to be…

Mathematical Physics · Physics 2007-07-19 Kalle Kytölä

We present and test a code for two-fluid simulations of galaxy formation, one of the fluids being collision-less. The hydrodynamical evolution is solved through the SPH method while gravitational forces are calculated using a tree method.…

Astrophysics · Physics 2007-05-23 John Hultman , Daniel Kaellander

In [Decompositions and statistics for \beta(1,0)-trees and nonseparable permutations, Advances Appl. Math. 42 (2009) 313--328] we introduced an involution, h, on \beta(1,0)-trees. We neglected, however, to prove that h indeed is an…

Combinatorics · Mathematics 2012-10-08 Anders Claesson , Sergey Kitaev , Einar Steingrímsson

We present efficient combinatorial parameterized algorithms for several classical graph-based counting problems in computational chemistry, including (i) Kekule structures, (ii) the Hosoya index, (iii) the Merrifield-Simmons index, and (iv)…

Data Structures and Algorithms · Computer Science 2025-08-12 Giovanna K. Conrado , Amir K. Goharshady , Harshit J. Motwani , Sergei Novozhilov

We present a new stellar evolution code and a set of results, demonstrating its capability at calculating full evolutionary tracks for a wide range of masses and metallicities. The code is fast and efficient, and is capable of following…

Astrophysics · Physics 2009-11-13 Attay Kovetz , Ofer Yaron , Dina Prialnik

Somatic variants can be used as lineage markers for the phylogenetic reconstruction of cancer evolution. Since somatic phylogenetics is complicated by sample heterogeneity, novel specialized tree-building methods are required for cancer…

Computational Engineering, Finance, and Science · Computer Science 2014-12-31 Victoria Popic , Raheleh Salari , Iman Hajirasouliha , Dorna Kashef-Haghighi , Robert B. West , Serafim Batzoglou
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