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The population dynamics and stability of ecosystems of interacting species is studied from the perspective of non-equilibrium thermodynamics by assuming that species, through their biotic and abiotic interactions, are units of entropy…

Biological Physics · Physics 2007-05-23 Karo Michaelian

Stability is a desirable property of complex ecosystems. If a community of interacting species is at a stable equilibrium point then it is able to withstand small perturbations to component species' abundances without suffering adverse…

Populations and Evolution · Quantitative Biology 2022-09-13 Francesco Caravelli , Phillip Staniczenko

The consensus that complexity begets stability in ecosystems was challenged in the seventies, a result recently extended to ecologically-inspired networks. The approaches assume the existence of a feasible equilibrium, i.e. with positive…

Populations and Evolution · Quantitative Biology 2016-12-21 Michael Dougoud , Laura Vinckenbosch , Rudolf Rohr , Louis-Félix Bersier , Christian Mazza

Systems of dynamical interactions between competing species can be used to model many complex systems, and can be mathematically described by {\em random} networks. Understanding how patterns of activity arise in such systems is important…

Adaptation and Self-Organizing Systems · Physics 2016-01-21 Nick McCullen , Thomas Wagenknecht

There is an abundance of literature on complex networks describing a variety of relationships among units in social, biological, and technological systems. Such networks, consisting of interconnected nodes, are often self-organized,…

Adaptation and Self-Organizing Systems · Physics 2011-08-18 Paul J. Laurienti , Karen E. Joyce , Qawi K. Telesford , Jonathan H. Burdette , Satoru Hayasaka

We propose a minimal model of the dynamics of diversity -- replicator equations with extinction, invasion and mutation. We numerically study the behavior of this simple model and show that it displays completely different behavior from the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Kei Tokita , Ayumu Yasutomi

Scale-free (SF) networks and small world networks have been found to occur in very diverse contexts. It is this striking universality which makes one look for widely applicable mechanisms which lead to the formation of such networks. In…

Disordered Systems and Neural Networks · Physics 2007-05-23 Markus Brede , John Finnigan

Critical states are sometimes identified experimentally through power-law statistics or universal scaling functions. We show here that such features naturally emerge from networks in self-sustained irregular regimes away from criticality.…

Neurons and Cognition · Quantitative Biology 2017-02-08 Jonathan Touboul , Alain Destexhe

The effect of disturbance on a model ecosystem of sessile and mutually competitive species [Mathiesen et al. Phys. Rev. Lett. 107, 188101 (2011); Mitarai et al. Phys. Rev. E 86, 011929 (2012) ] is studied. The disturbance stochastically…

Populations and Evolution · Quantitative Biology 2015-06-18 Filippo Botta , Namiko Mitarai

Scale-free networks are abundant in nature and society, describing such diverse systems as the world wide web, the web of human sexual contacts, or the chemical network of a cell. All models used to generate a scale-free topology are…

Statistical Mechanics · Physics 2009-11-07 Albert-Laszlo Barabasi , Erzsebet Ravasz , Tamas Vicsek

It has been observed that mutualistic bipartite networks have a nested structure of interactions. In addition, the degree distributions associated with the two guilds involved in such networks (e.g. plants & pollinators or plants & seed…

Populations and Evolution · Quantitative Biology 2007-09-20 Diego Medan , Roberto P. J. Perazzo , Mariano Devoto , Enrique Burgos , Martin G. Zimmermann , Horacio Ceva , Ana M. Delbue

We introduce and solve a model which considers two coupled networks growing simultaneously. The dynamics of the networks is governed by the new arrival of network elements (nodes) making preferential attachments to pre-existing nodes in…

Statistical Mechanics · Physics 2007-05-23 Dafang Zheng , Guler Ergun

A system made up of N interacting species is considered. Self-reaction terms are assumed of the logistic type. Pairwise interactions take place among species according to different modalities, thus yielding a complex asymmetric disordered…

Statistical Mechanics · Physics 2018-11-14 Giulia Cencetti , Franco Bagnoli , Giorgio Battistelli , Luigi Chisci , Duccio Fanelli

By generalizing a class of models recently introduced to account for protracted transients in biological systems, we identify a novel mechanism for hyperuniformity. In this model, competition of particles over a shared resource guides the…

Statistical Mechanics · Physics 2025-12-11 Tal Agranov , Natan Wiegenfeld , Omer Karin , Benjamin D. Simons

What is the underlying mechanism leading to power-law degree distributions of many natural and artificial networks is still at issue. We consider that scale-free networks emerges from self-organizing process, and such a evolving model is…

Statistical Mechanics · Physics 2007-05-23 Gang Yan , Tao Zhou , Ying-Di Jin , Zhong-Qian Fu

The assembly of ecological communities from a pool of species is central to ecology, but the effect of this process on properties of community interaction networks is still largely unknown. Here, we use a systematic analytical framework to…

Populations and Evolution · Quantitative Biology 2016-07-19 Guy Bunin

Population dynamics in random ecological networks are investigated by analyzing a simple deterministic equation. It is found that a sequence of abrupt changes of populations punctuating quiescent states characterize the long time behavior.…

chao-dyn · Physics 2008-02-03 Shin-ichi Sasa , Tsuyoshi Chawanya

We investigate the dynamics of two models of biological networks with purely suppressive interactions between the units; species interacting via niche competition and neurons via inhibitory synaptic coupling. In both of these cases,…

Disordered Systems and Neural Networks · Physics 2015-08-12 David A. Kessler , Herbert Levine

Rivers exhibit fractal-like properties that are associated with scaling laws linking geometry and size. The optimal channel network (OCN) model, which is a mathematically tractable representation of river networks often used in theoretical…

Physics and Society · Physics 2025-03-24 E. H. Colombo , A. B. García-Andrade , Ismail , J. M. Calabrese

Understanding systems level behaviour of many interacting agents is challenging in various ways, here we'll focus on the how the interaction between components can lead to hierarchical structures with different types of dynamics, or…

Populations and Evolution · Quantitative Biology 2018-12-26 Henrik Jeldtoft Jensen