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Positive density-dependence occurs when individuals experience increased survivorship, growth, or reproduction with increased population densities. Mechanisms leading to these positive relationships include mate limitation, saturating…

Populations and Evolution · Quantitative Biology 2019-02-12 Sebastian J. Schreiber

The puzzle associated with the cost of sex, an old problem of evolutionary biology, is discussed here from the point of view of nonequilibrium statistical mechanics. The results suggest, in a simplified model, that the prevalence of sexual…

Populations and Evolution · Quantitative Biology 2013-08-20 Renato Vieira dos Santos

This paper proposes a stochastic block model with dynamics where the population grows using preferential attachment. Nodes with higher weighted degree are more likely to recruit new nodes, and nodes always recruit nodes from their own…

Social and Information Networks · Computer Science 2024-01-15 Simina Brânzei , Nithish Kumar , Gireeja Ranade

We consider two versions of stochastic population models with mutation and selection. The first approach relies on a multitype branching process; here, individuals reproduce and change type (i.e., mutate) independently of each other,…

Populations and Evolution · Quantitative Biology 2009-02-19 E. Baake , R. Bialowons

Understanding how cooperation can evolve in populations despite its cost to individual cooperators is an important challenge. Models of spatially structured populations with one individual per node of a graph have shown that cooperation,…

Populations and Evolution · Quantitative Biology 2024-12-30 Alix Moawad , Alia Abbara , Anne-Florence Bitbol

Trusting in others and reciprocating that trust with trustworthy actions are crucial to successful and prosperous societies. The Trust Game has been widely used to quantitatively study trust and trustworthiness, involving a sequential…

Statistical Mechanics · Physics 2021-01-04 Ik Soo Lim

Ben-Ari and Schinazi (2016) introduced a stochastic model to study `virus-like evolving population with high mutation rate'. This model is a birth and death model with an individual at birth being either a mutant with a random fitness…

Probability · Mathematics 2020-01-03 Rahul Roy , Hideki Tanemura

Altruistic punishment, where individuals incur personal costs to punish others who have harmed third parties, presents an evolutionary conundrum as it undermines individual fitness. Resolving this puzzle is crucial for understanding the…

Populations and Evolution · Quantitative Biology 2025-01-07 Chen Shen , Zhao Song , Lei Shi , Jun Tanimoto , Zhen Wang

The concept of fitness is central to evolution, but it quantifies only the expected number of offspring an individual will produce. The actual number of offspring is also subject to noise, arising from environmental or demographic…

Populations and Evolution · Quantitative Biology 2022-09-07 Guocheng Wang , Qi Su , Long Wang , Joshua B. Plotkin

Recently, a first step was made by the authors towards a systematic investigation of the effect of reaction-step-size noise - uncertainty in the step size of the reaction - on the dynamics of stochastic populations. This was done by…

Statistical Mechanics · Physics 2016-12-21 Shay Be'er , Michael Assaf

In species reproducing both sexually and asexually clones are often more common in recently established populations. Earlier studies have suggested that this pattern arises from natural selection favouring asexual recruitment in young…

Populations and Evolution · Quantitative Biology 2017-12-06 M. Rafajlovic , D. Kleinhans , C. Gulliksson , J. Fries , D. Johansson , A. Ardehed , L. Sundqvist , R. T. Pereyra , B. Mehlig , P. R. Jonsson , K. Johannesson

A model of interacting random walkers is presented and shown to give rise to patterns consisting in periodic arrangements of fluctuating particle clusters. The model represents biological individuals that die or reproduce at rates depending…

Statistical Mechanics · Physics 2009-11-10 Cristobal Lopez , Emilio Hernandez-Garcia

Evolution occurs in populations of reproducing individuals. The structure of a biological population affects which traits evolve. Understanding evolutionary game dynamics in structured populations is difficult. Precise results have been…

Populations and Evolution · Quantitative Biology 2017-08-16 Benjamin Allen , Gabor Lippner , Yu-Ting Chen , Babak Fotouhi , Naghmeh Momeni , Martin A. Nowak , Shing-Tung Yau

We propose a compartmental model for epidemiology wherein the population is split into groups with either comply or refuse to comply with protocols designed to slow the spread of a disease. Parallel to the disease spread, we assume that…

Dynamical Systems · Mathematics 2025-11-27 Christian Parkinson , Weinan Wang

Within the framework of population genetics we consider the evolution of an asexual haploid population under the effect of a rapidly varying natural selection (microevolution). We focus on the case in which the environment exerting…

Populations and Evolution · Quantitative Biology 2015-06-22 Stefano Bo , Andrea Mazzolini , Antonio Celani

Standard neutral population genetics theory with a strictly fixed population size has important limitations. An alternative model that allows independently fluctuating population sizes and reproduces the standard neutral evolution is…

Populations and Evolution · Quantitative Biology 2017-03-08 Thiparat Chotibut , David R. Nelson

We consider an asexual biological population of constant size $N$ evolving in discrete time under the influence of selection and mutation. Beneficial mutations appear at rate $U$ and their selective effects $s$ are drawn from a distribution…

Populations and Evolution · Quantitative Biology 2015-05-14 Su-Chan Park , Damien Simon , Joachim Krug

We investigate the process of fixation of advantageous mutations in an asexual population. We assume that the effect of each beneficial mutation is exponentially distributed with mean value $\omega_{med}=1/\beta$. The model also considers…

Populations and Evolution · Quantitative Biology 2009-11-10 Viviane M. de Oliveira , Paulo R. A. Campos

We study the effects of demographic stochasticity on the long-term dynamics of biological coevolution models of community assembly. The noise is induced in order to check the validity of deterministic population dynamics. While mutualistic…

Populations and Evolution · Quantitative Biology 2010-04-16 Yohsuke Murase , Takashi Shimada , Nobuyasu Ito , Per Arne Rikvold

In a recent article, Desai and Fisher (2007) proposed that the speed of adaptation in an asexual population is determined by the dynamics of the stochastic edge of the population, that is, by the emergence and subsequent establishment of…

Populations and Evolution · Quantitative Biology 2007-12-19 Eric Brunet , Igor M. Rouzine , Claus O. Wilke