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Cell clustering is crucial for uncovering cellular heterogeneity in single-cell RNA sequencing (scRNA-seq) data by identifying cell types and marker genes. Despite its importance, benchmarks for scRNA-seq clustering methods remain…

Genomics · Quantitative Biology 2025-12-03 Ping Xu , Zaitian Wang , Zhirui Wang , Pengjiang Li , Jiajia Wang , Ran Zhang , Pengfei Wang , Yuanchun Zhou

In unsupervised learning, identifying an effective clustering algorithm for a given tabular dataset remains a fundamental challenge. We introduce ClustRecNet, a novel end-to-end deep learning framework that recommends a suitable clustering…

There is a great diversity of clustering and community detection algorithms, which are key components of many data analysis and exploration systems. To the best of our knowledge, however, there does not exist yet any uniform benchmarking…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-02-04 Artem Lutov , Mourad Khayati , Philippe Cudré-Mauroux

The evaluation of clustering algorithms can involve running them on a variety of benchmark problems, and comparing their outputs to the reference, ground-truth groupings provided by experts. Unfortunately, many research papers and graduate…

Machine Learning · Computer Science 2023-10-27 Marek Gagolewski

Clustering algorithms aim to organize data into groups or clusters based on the inherent patterns and similarities within the data. They play an important role in today's life, such as in marketing and e-commerce, healthcare, data…

Machine Learning · Computer Science 2024-01-17 Hui Yin , Amir Aryani , Stephen Petrie , Aishwarya Nambissan , Aland Astudillo , Shengyuan Cao

Experimental evaluation is a major research methodology for investigating clustering algorithms and many other machine learning algorithms. For this purpose, a number of benchmark datasets have been widely used in the literature and their…

Machine Learning · Computer Science 2019-10-21 Tiantian Zhang , Li Zhong , Bo Yuan

Deep Learning has demonstrated a significant improvement against traditional machine learning approaches in different domains such as image and speech recognition. Their success on benchmark datasets is transferred to the real-world through…

Computer Vision and Pattern Recognition · Computer Science 2022-10-12 Ahmad Mustapha , Wael Khreich , Wasim Masr

Clustering is an unsupervised technique of Data Mining. It means grouping similar objects together and separating the dissimilar ones. Each object in the data set is assigned a class label in the clustering process using a distance measure.…

Information Retrieval · Computer Science 2011-10-13 Parul Agarwal , M. Afshar Alam , Ranjit Biswas

Metric clustering is fundamental in areas ranging from Combinatorial Optimization and Data Mining, to Machine Learning and Operations Research. However, in a variety of situations we may have additional requirements or knowledge, distinct…

Machine Learning · Computer Science 2021-03-04 Brian Brubach , Darshan Chakrabarti , John P. Dickerson , Aravind Srinivasan , Leonidas Tsepenekas

With rapidly increasing data, clustering algorithms are important tools for data analytics in modern research. They have been successfully applied to a wide range of domains; for instance, bioinformatics, speech recognition, and financial…

Data Structures and Algorithms · Computer Science 2015-12-01 Ka-Chun Wong

We introduce the first work on benchmarking and evaluating deep clustering algorithms on large-scale non-categorical 3D CAD models. We first propose a workflow to allow expert mechanical engineers to efficiently annotate 252,648 carefully…

Computer Vision and Pattern Recognition · Computer Science 2024-05-01 Siyuan Xiang , Chin Tseng , Congcong Wen , Deshana Desai , Yifeng Kou , Binil Starly , Daniele Panozzo , Chen Feng

Finding meaningful groups, i.e., clusters, in high-dimensional data such as images or texts without labeled data at hand is an important challenge in data mining. In recent years, deep clustering methods have achieved remarkable results in…

Machine Learning · Computer Science 2024-10-15 Collin Leiber , Niklas Strauß , Matthias Schubert , Thomas Seidl

Text clustering is a fundamental task in natural language processing, yet traditional clustering algorithms with pre-trained embeddings often struggle in domain-specific contexts without costly fine-tuning. Large language models (LLMs)…

Computation and Language · Computer Science 2025-12-05 Yiming Xu , Yuan Yuan , Vijay Viswanathan , Graham Neubig

Performance of clustering algorithms is evaluated with the help of accuracy metrics. There is a great diversity of clustering algorithms, which are key components of many data analysis and exploration systems. However, there exist only few…

Data Structures and Algorithms · Computer Science 2019-02-18 Artem Lutov , Mourad Khayati , Philippe Cudré-Mauroux

Clustering is a fundamental machine learning task which has been widely studied in the literature. Classic clustering methods follow the assumption that data are represented as features in a vectorized form through various representation…

Machine Learning · Computer Science 2022-06-16 Sheng Zhou , Hongjia Xu , Zhuonan Zheng , Jiawei Chen , Zhao li , Jiajun Bu , Jia Wu , Xin Wang , Wenwu Zhu , Martin Ester

Training certifiably robust neural networks is an important but challenging task. While many algorithms for (deterministic) certified training have been proposed, they are often evaluated on different training schedules, certification…

Machine Learning · Computer Science 2025-05-29 Yuhao Mao , Stefan Balauca , Martin Vechev

In data containing heterogeneous subpopulations, classification performance benefits from incorporating the knowledge of cluster structure in the classifier. Previous methods for such combined clustering and classification either 1) are…

Machine Learning · Computer Science 2023-01-04 Shivin Srivastava , Siddharth Bhatia , Lingxiao Huang , Lim Jun Heng , Kenji Kawaguchi , Vaibhav Rajan

Clustering is a core task in machine learning with wide-ranging applications in data mining and pattern recognition. However, its unsupervised nature makes it inherently challenging. Many existing clustering algorithms suffer from critical…

Machine Learning · Computer Science 2025-07-29 Ahmed Shokry , Ayman Khalafallah

Clustering is a widely used technique in data mining applications for discovering patterns in underlying data. Most traditional clustering algorithms are limited to handling datasets that contain either numeric or categorical attributes.…

Artificial Intelligence · Computer Science 2007-05-23 Zengyou He , Xiaofei Xu , Shengchun Deng

Multiple datasets containing different types of features may be available for a given task. For instance, users' profiles can be used to group users for recommendation systems. In addition, a model can also use users' historical behaviors…

Machine Learning · Computer Science 2016-05-10 Weixiang Shao , Xiaoxiao Shi , Philip S. Yu
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