Related papers: On certain combinatorial expressions of TASEP tran…
The natural habitat of most Bayesian methods is data represented by exchangeable sequences of observations, for which de Finetti's theorem provides the theoretical foundation. Dirichlet process clustering, Gaussian process regression, and…
Biomolecular folding, at least in simple systems, can be described as a two state transition in a free energy landscape with two deep wells separated by a high barrier. Transition paths are the short part of the trajectories that cross the…
To mimic the complex transport-like collective phenomena in a man-made or natural system, we study an open network junction model of totally asymmetric simple exclusion process with bulk particle attachment and detachment. The stationary…
We consider totally asymmetric simple exclusion processes with n types of particle and holes ($n$-TASEPs) on $\mathbb {Z}$ and on the cycle $\mathbb {Z}_N$. Angel recently gave an elegant construction of the stationary measures for the…
Recently, it was shown that spatial correlations may have a drastic effect on the dynamics of real-space condensates in driven mass-transport systems: in models with a spatially correlated steady state, the condensate is quite generically…
In this paper we examine the descriptive potential of a combinatorial data structure known as "Generating Set" in constructing the boundary maps of a simplicial complex. By refining the approach of \cite{Dumas} in generating these maps, we…
Bidirectional transport in (quasi) one-dimensional systems generically leads to cluster-formation and small particle currents. This kind of transport can be described by the asymmetric simple exclusion process (ASEP) with two species of…
We investigate two closely related setups. In the first one we consider a TASEP-style system of particles with specified initial and final configurations. The probability of each history of the system is assumed to be equal. We show that…
Macroevolutionary dynamics often display sudden, explosive surges, where systems remain relatively stable for extended periods before experiencing dramatic acceleration that frequently exceeds traditional exponential growth. This pattern is…
We consider an interacting particle system, which generalizes the classical totally asymmetric simple exclusion process (TASEP), in that each site can contain up to a fixed finite number of particles, and the particle movement is governed…
We investigate the asymmetric simple exclusion process (ASEP) on an interval with open boundaries. We provide a representation for its stationary distribution as a marginal of the top layer of a two-layer ensemble under Liggett's condition.…
The purpose of this article is to study the relation between combinatorial equivalence and topological conjugacy, specifically how a certain type of combinatorial equivalence implies topological conjugacy. We introduce the concept of…
The Asymmetric Simple Inclusion Process (ASIP), a lattice-gas model of unidirectional transport and aggregation, was recently proposed as an `inclusion' counterpart of the Asymmetric Simple Exclusion Process (ASEP). In this paper we present…
Combinatorial enumeration leads to counting generating functions presenting a wide variety of analytic types. Properties of generating functions at singularities encode valuable information regarding asymptotic counting and limit…
In this paper, we study a distribution of labeled particles on a continuous ring. It arises in three different ways, all related to the multi-type TASEP on a ring. We prove formulas for the probability density function for some permutations…
The totally asymmetric simple exclusion process (TASEP) on the one-dimensional lattice with the Bernoulli \rho measure as initial conditions, 0<\rho<1, is stationary in space and time. Let N_t(j) be the number of particles which have…
Fundamental biological processes such as transcription and translation, where a genetic sequence is sequentially read by a macromolecule, have been well described by a classical model of non-equilibrium statistical physics, the totally…
We explore the stationary densities in totally asymmetric exclusion processes (TASEP) with open boundary conditions and spatially inhomogeneous hopping rates. We calculate the steady state density profiles that characterise the associated…
It has been known that the transition probability of the single species ASEP with $N$ particles is expressed as a sum of $N!$ $N$-fold contour integrals which are related to permutations in the symmetric group $S_N$. On other hand, the…
We study the one-dimensional discrete time totally asymmetric simple exclusion process with parallel update rules on a spatially periodic domain. A multi-point space-time joint distribution formula is obtained for general initial…