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We propose a dynamical model for non-specific DNA-protein interaction, which is based on the 'bead-spring' model previously developed by other groups, and investigate its properties using Brownian Dynamics simulations. We show that the…

Biological Physics · Physics 2009-01-14 Ana-Maria Florescu , Marc Joyeux

We analyze the static response to perturbations of nonequilibrium steady states that can be modeled as one-dimensional diffusions on the circle. We demonstrate that an arbitrary perturbation can be broken up into a combination of three…

Statistical Mechanics · Physics 2022-01-11 Qi Gao , Hyun-Myung Chun , Jordan M. Horowitz

This article is devoted to the stabilization of two underactuated planar systems, the well-known straight beam-and-ball system and an original circular beam-and-ball system. The feedback control for each system is designed, using the Jordan…

Robotics · Computer Science 2010-12-01 Yannick Aoustin , Alexander Formal'skii

We present a solvable one-dimensional spin-1/2 model on the diamond chain featuring three-spin interactions, which displays both, mobile excitations driving a second-order phase transition between an ordered and a $\mathbb{Z}_2$-symmetry…

Strongly Correlated Electrons · Physics 2026-04-15 M. Bayer , M. Vieweg , K. P. Schmidt

Stochastic thermodynamics provides a useful set of tools to analyze and constrain the behavior of far from equilibrium systems. In this paper, we report an application of ideas from stochastic thermodynamics to the problem of membrane…

Soft Condensed Matter · Physics 2019-10-25 Michael Nguyen , Suriyanarayanan Vaikuntanathan

Parametric instabilities are a known feature of periodically driven dynamic systems; at particular frequencies and amplitudes of the driving modulation, the system's quasi-periodic response undergoes a frequency lock-in, leading to a…

Mathematical Physics · Physics 2026-05-22 Helen E. Read , Giada Risso , Adel Djellouli , Katia Bertoldi , Arnaud Lazarus

In this paper we return to the problem of reduced-state dynamics in the presence of an interacting environment. The question we investigate is how to appropriately model a particular system evolution given some knowledge of the…

Quantum Physics · Physics 2015-07-02 Eric Chitambar , Ali Abu-Nada , Russell Ceballos , Mark Byrd

Robust phases of matter, which remain stable under small perturbations, are of fundamental importance in statistical physics and quantum information. Recent advances in interactive quantum dynamics have led to renewed interest in…

Statistical Mechanics · Physics 2026-01-28 Hyunsoo Ha , David A. Huse , Rhine Samajdar

A quantum harmonic oscillator (spring subsystem) is stabilized towards a target Fock state by reservoir engineering. This passive and open-loop stabilization works by consecutive and identical Hamiltonian interactions with auxiliary…

Quantum Physics · Physics 2012-10-04 Alain Sarlette , Pierre Rouchon

Cyclic (rock-paper-scissors-type) population models serve to mimic complex species interactions. Focusing on a paradigmatic three-species model with mutations in one dimension, we observe an interplay between equilibrium and non-equilibrium…

Statistical Mechanics · Physics 2010-07-07 Anton A. Winkler , Tobias Reichenbach , Erwin Frey

All interesting and fascinating collective properties of a complex system arise from the intricate way in which its components interact. Various systems in physics, biology, social sciences and engineering have been successfully modelled as…

Adaptation and Self-Organizing Systems · Physics 2021-04-23 L. V. Gambuzza , F. Di Patti , L. Gallo , S. Lepri , M. Romance , R. Criado , M. Frasca , V. Latora , S. Boccaletti

Hydrodynamic interactions between two identical elastic dumbbells settling under gravity in a viscous fluid at low-Reynolds-number are investigated within the point-particle model. Evolution of a benchmark initial configuration is studied,…

Fluid Dynamics · Physics 2015-06-23 Marek Bukowicki , Marta Gruca , Maria L. Ekiel-Jezewska

Stochastic partial differential equations can be used to model second order thermodynamical phase transitions, as well as a number of critical out-of-equilibrium phenomena. In (2+1) dimensions, many of these systems are conjectured (and…

Statistical Mechanics · Physics 2013-05-29 L. Moriconi , M. Moriconi

Semi-active vibration reduction techniques are defined as techniques in which controlled actions do not operate directly on the system's degrees of freedom (as in the case of active vibration control) but on the system's parameters, i.e.,…

Dynamical Systems · Mathematics 2021-05-17 Alexander Nowak , L. Flavio Campanile , Alexander Hasse

We study a class of elastic systems described by a (hyperbolic) partial differential equation. Our working example is the equation of a vibrating string subject to linear disturbance. The main goal is to establish conditions for…

Analysis of PDEs · Mathematics 2007-05-23 M. I. Caiado , A. V. Sarychev

We examine how perturbed shear flows evolve in two-dimensional, incompressible, inviscid hydrodynamical fluids, with the ultimate goal of understanding the dynamics of accretion disks. To linear order, vorticity waves are swung around by…

Astrophysics · Physics 2009-11-13 Yoram Lithwick

We investigate theoretically the dynamics of the system that consists of a cascade three-level emitter interacting with a single-mode resonator in the deep-strong-coupling regime. We show that the dynamical evolution of the system can only…

Quantum Physics · Physics 2018-11-21 Li-Li Zheng , Qian Bin , Zhi-Ming Zhan , Sha Li , Xin-You Lü , Ying Wu

When the frequencies of the elastic and pendular oscillations of an elastic pendulum or swinging spring are in the ratio two-to-one, there is a regular exchange of energy between the two modes of oscillation. We refer to this phenomenon as…

Exactly Solvable and Integrable Systems · Physics 2009-11-10 Peter Lynch , Conor Houghton

We propose a thermodynamically consistent minimal model to study synchronization which is made of driven and interacting three-state units. This system exhibits at the mean-field level two bifurcations separating three dynamical phases: a…

Statistical Mechanics · Physics 2018-09-12 Tim Herpich , Juzar Thingna , Massimiliano Esposito

The Slinky is a well-known example of a highly flexible helical spring, exhibiting large, geometrically nonlinear deformations from minimal applied forces. By considering it as a system of coils that act to resist axial, shearing, and…

Soft Condensed Matter · Physics 2015-06-19 Douglas P. Holmes , Andy D. Borum , Billy F. Moore , Raymond H. Plaut , David A. Dillard