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Persistent homology is a widely-used tool in topological data analysis (TDA) for understanding the underlying shape of complex data. By constructing a filtration of simplicial complexes from data points, it captures topological features…

Algebraic Topology · Mathematics 2025-10-23 Aleksei Luchinsky , Umar Islambekov

Identifying molecular signatures from complex disease patients with underlying symptomatic similarities is a significant challenge in the analysis of high dimensional multi-omics data. Topological data analysis (TDA) provides a way of…

Genomics · Quantitative Biology 2024-04-23 Davide Gurnari , Aldo Guzmán-Sáenz , Filippo Utro , Aritra Bose , Saugata Basu , Laxmi Parida

Quantum computing exhibits the unique capability to natively and efficiently encode various natural phenomena, promising theoretical speedups of several orders of magnitude. However, not all computational tasks can be efficiently executed…

Software Engineering · Computer Science 2025-04-28 Vincenzo De Maio , Ivona Brandic , Ewa Deelman , Jürgen Cito

We construct a class of topological quantum codes to perform quantum entanglement distillation. These codes implement the whole Clifford group of unitary operations in a fully topological manner and without selective addressing of qubits.…

Quantum Physics · Physics 2009-11-13 H. Bombin , M. A. Martin-Delgado

Quantum algorithms for topological data analysis provide significant advantage over the best classical algorithm. Different from the previous simplical complex on points cloud, the GLMY homology introduced by Alexander Grigor'yan, Yong Lin,…

Quantum Physics · Physics 2025-09-30 Yunpeng Zi , Muchun Yang , D. L. Zhou

Topological Data Analysis (TDA) is an approach to handle with big data by studying its shape. A main tool of TDA is the persistence diagram, and one can use it to compare data sets. One approach to learn on the similarity between two…

Applications · Statistics 2020-03-04 Sarit Agami

Topological data analysis (TDA) is a relatively new field that is gaining rapid adoption due to its robustness and ability to effectively describe complex datasets by quantifying geometric information. In imaging contexts, TDA typically…

Computer Vision and Pattern Recognition · Computer Science 2025-07-15 Aaryam Sharma

DNA sequencing allows for the determination of the genetic code of an organism, and therefore is an indispensable tool that has applications in Medicine, Life Sciences, Evolutionary Biology, Food Sciences and Technology, and Agriculture. In…

Quantum Physics · Physics 2023-04-24 Nouhaila Innan , Muhammad Al-Zafar Khan

By their nature it is difficult to differentiate chaotic dynamical systems through measurement. In recent years, work has begun on using methods of Topological Data Analysis (TDA) to qualitatively type dynamical data by approximating the…

Algebraic Topology · Mathematics 2026-04-14 Tobias Timofeyev , Christopher Potvin , Benjamin Jones , Kristin M. Kurianski , Miguel Lopez , Sunia Tanweer

Topological Data Analysis (TDA) is a novel new and fast growing field of data science providing a set of new topological and geometric tools to derive relevant features out of complex high-dimensional data. In this paper we apply two of…

Computation and Language · Computer Science 2019-06-06 Naiereh Elyasi , Mehdi Hosseini Moghadam

Quantum algorithms provide a potential strategy for solving computational problems that are intractable by classical means. Computing the topological invariants of topological matter is one central problem in research on quantum materials,…

Quantum Physics · Physics 2024-12-18 Marcel Niedermeier , Marc Nairn , Christian Flindt , Jose L. Lado

Current technologies in quantum-based communications bring a new integration of quantum data with classical data for hybrid processing. However, the frameworks of these technologies are restricted to a single classical or quantum task,…

Quantum Physics · Physics 2022-09-02 Quoc Hoan Tran , Sanjib Ghosh , Kohei Nakajima

Data quality is crucial for the successful training, generalization and performance of machine learning models. We propose to measure the quality of a subset concerning the dataset it represents, using topological data analysis techniques.…

Algebraic Topology · Mathematics 2024-10-01 Álvaro Torras-Casas , Eduardo Paluzo-Hidalgo , Rocio Gonzalez-Diaz

Topological data analysis (TDA) offers novel mathematical tools for deep learning. Inspired by Carlsson et al., this study designs topology-aware convolutional kernels that significantly improve speech recognition networks. Theoretically,…

Machine Learning · Computer Science 2025-05-28 Zhiwang Yu

Deep generative models have emerged as a powerful tool for learning useful molecular representations and designing novel molecules with desired properties, with applications in drug discovery and material design. However, most existing deep…

In this work, we propose novel families of positional encodings tailored to graph neural networks obtained with quantum computers. These encodings leverage the long-range correlations inherent in quantum systems that arise from mapping the…

We introduce a subsampling method for topological data analysis based on strong collapses of simplicial complexes. Given a point cloud and a scale parameter $\delta$, we construct a subsampling that preserves both global and local…

Computational Geometry · Computer Science 2025-11-27 Elias Gabriel Minian

Data encoding remains a fundamental bottleneck in quantum machine learning, where amplitude encoding of high-dimensional classical vectors into quantum states incurs exponential cost. In this work, we propose a pre-trained tensor-train (TT)…

Quantum Physics · Physics 2026-02-11 Jun Qi , Chao-Han Huck Yang , Pin-Yu Chen , Min-Hsiu Hsieh

This paper introduces advanced techniques of Topological Data Analysis (TDA) for unsupervised anomaly detection and customer segmentation in banking data. Using the Mapper algorithm and persistent homology, we develop unsupervised…

Machine Learning · Computer Science 2025-08-21 Leonardo Aldo Alejandro Barberi , Linda Maria De Cave

It is a fundamental, but still elusive question whether the schemes based on quantum mechanics, in particular on quantum entanglement, can be used for classical information processing and machine learning. Even partial answer to this…

Machine Learning · Statistics 2022-06-24 Yuhan Liu , Xiao Zhang , Maciej Lewenstein , Shi-Ju Ran