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From a purely operational standpoint, the existence of microbes that can grow under extreme conditions, or "extremophiles", leads to the question of how the molecules making up these microbes can maintain both their structure and function.…

Soft Condensed Matter · Physics 2016-03-23 Q. Huang , K. N. Tran , J. M. Rodgers , D. H. Bartlett , R. J. Hemley , T. Ichiye

Inside every living cell is the cytoplasm: a fluid mixture of thousands of different macromolecules, predominantly proteins. This mixture is where most of the biochemistry occurs that enables living cells to function, and it is perhaps the…

Soft Condensed Matter · Physics 2009-11-11 Richard P. Sear

A nonequilibrium system is characterized by a set of thermodynamic forces and fluxes which give rise to entropy production (EP). We show that these forces and fluxes have an information-geometric structure, which allows us to decompose EP…

Statistical Mechanics · Physics 2022-12-16 Artemy Kolchinsky , Andreas Dechant , Kohei Yoshimura , Sosuke Ito

The exciton dynamics in a molecular heterodimer is studied as a function of differences in excitation and reorganization energies, asymmetry in transition dipole moments and excited state lifetimes. The heterodimer is composed of two…

Chemical Physics · Physics 2015-06-03 V. Balevicius , A. Gelzinis , D. Abramavicius , T. Mancal , L. Valkunas

Active matter is rapidly becoming a key paradigm of out-of-equilibrium soft matter exhibiting complex collective phenomena, yet the thermodynamics of such systems remain poorly understood. In this letter we study the nonequilbrium…

Statistical Mechanics · Physics 2019-10-30 Emanuele Crosato , Mikhail Prokopenko , Richard E. Spinney

A diathermal wall between two heat baths at different temperatures can be mimicked by a layer of independent spin pairs with some internal energy and where each spin $\sigma_a$ is flipped by thermostat $a$ ($a=1,2$). The transition rates…

Statistical Mechanics · Physics 2015-05-06 Françoise Cornu , Michel Bauer

An experimental study is presented, about transitions between Non-Equilibrium Steady States (NESS) in a dissipative medium. The core device is a small rotating blade that imposes cycles of increasing and decreasing forcings to a granular…

Statistical Mechanics · Physics 2015-06-11 Anne Mounier , Antoine Naert

Anisotropy of temperature fields, chemical potentials and ion concentration gradients provide the fuel that feeds dynamical processes that sustain life. Dynamical flows in respective environments incur losses manifested as entropy…

Statistical Mechanics · Physics 2022-10-04 Olga Movilla Miangolarra , Amirhossein Taghvaei , Tryphon T. Georgiou

The classical "game of life" (GOL) due to Conway is a famous mathematical game constructed as a two-dimensional cellular automaton in which each cell is either alive or dead. A set of evolutionary rules determines whether a cell dies,…

Quantum Physics · Physics 2019-02-22 David Faux , Mayank Shah , Christopher Knapp

Excitability is an attribute of life, and is a driving force in the descent of complexity. Cellular electrical activity as realized by membrane proteins that act as either channels or transporters is the basis of excitability. Electrical…

Biomolecules · Quantitative Biology 2009-11-05 Ashok Palaniappan , Eric Jakobsson

To describe the nonequilibrium states of a system we introduce a new thermodynamic parameter - the lifetime of a system. The statistical distributions which can be obtained out of the mesoscopic description characterizing the behaviour of a…

Statistical Mechanics · Physics 2007-05-23 V. V. Ryazanov , S. G. Shpyrko

Biomolecular condensates form on timescales of seconds in cells upon environmental or compositional changes. Condensate formation is thus argued to act as a mechanism for sensing such changes and quickly initiating downstream processes,…

Subcellular Processes · Quantitative Biology 2025-12-09 Henry Alston , Mason Rouches , Arvind Murugan , Aleksandra M. Walczak , Thierry Mora

Active matter consumes energy from the environment and transforms it into mechanical work. Notable examples from biology include cell division, bacterial swarms, and muscle contraction. In this work, we investigate the nature of active…

Soft Condensed Matter · Physics 2023-09-28 Michael J. Landry

Motivated by the notion that the mathematics of gravity can be reproduced from a statistical requirement of maximal entropy, we study the consequence of introducing an entropic source term in the Einstein-Hilbert action. For a spatially…

General Relativity and Quantum Cosmology · Physics 2024-03-20 Soumya Chakrabarti

We investigate the nonequilibrium stationary state (NESS) of the two-dimensional Ising model under a stochastic dichotomous modulation of temperature, which alternates between $T_c \pm \delta$ around the critical temperature $T_c$ at a rate…

Statistical Mechanics · Physics 2026-03-18 Debraj Dutta , Ritwick Sarkar , Urna Basu

The goal of this paper is to explore the potential multistability of the climate of a planet around the habitable zone. A thorough investigation of the thermodynamics of the climate system is performed for very diverse conditions of energy…

Atmospheric and Oceanic Physics · Physics 2015-06-05 Robert Boschi , Valerio Lucarini , Salvatore Pascale

Phototaxis is one of the most fundamental stimulus-response behaviors in biology wherein motile micro-organisms sense light gradients to swim towards the light source. Apart from single cell survival and growth, it plays a major role at the…

Soft Condensed Matter · Physics 2020-01-08 Sujeet Kumar Choudhary , Aparna Baskaran , Prerna Sharma

Molecular dynamics simulations were carried out to test the thermodynamic theory of weakly excited, two-dimensional granular systems [Hayakawa and Hong, Phys. Rev. Lett. 78, 2764 (1997)], where granular materials are viewed as a collection…

Statistical Mechanics · Physics 2009-09-25 Paul V. Quinn , Daniel C. Hong

We consider a multiscale stochastic compartmental model with three types of cells (stem cells, immature cells and mature cells) which combines cell proliferation and cell differentiation. We derive a hydrodynamic limit when the number of…

Probability · Mathematics 2026-03-10 Vincent Bansaye , Ana Fernández Baranda , Stéphane Giraudier , Sylvie Méléard

Chemical processes in closed systems are poorly controllable since they always relax to equilibrium. Living systems avoid this fate and give rise to a much richer diversity of phenomena by operating under nonequilibrium conditions. Recent…

Chemical Physics · Physics 2019-09-11 Emanuele Penocchio , Riccardo Rao , Massimiliano Esposito
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