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We study the stochastic dynamics of sequences evolving by single site mutations, segmental duplications, deletions, and random insertions. These processes are relevant for the evolution of genomic DNA. They define a universality class of…

Genomics · Quantitative Biology 2009-11-11 Philipp W. Messer , Michael Lassig , Peter F. Arndt

We provide new regularity results for the solutions of the Kolmogorov equation associated to a SPDE with nonlinear diffusion coefficients and a Burgers type nonlinearity. This generalizes previous results in the simpler cases of additive or…

Probability · Mathematics 2018-06-08 Charles-Edouard Bréhier , Arnaud Debussche

Robust stability and stochastic stability have separately seen intense study in control theory for many decades. In this work we establish relations between these properties for discrete-time systems and employ them for robust control…

Dynamical Systems · Mathematics 2020-04-20 Benjamin Gravell , Peyman Mohajerin Esfahani , Tyler Summers

We find that sensory noise delivered together with a weak periodic signal not only enhances nonlinear response of neuronal networks, but also improves the synchronization of the response to the signal. We reveal this phenomenon in neuronal…

Neurons and Cognition · Quantitative Biology 2015-08-25 M. A. Lopes , K. -E. Lee , A. V. Goltsev , J. F. F. Mendes

We consider the effect of replacing in stochastic differential equations leading to the dynamical collapse of the statevector, white noise stochastic processes with non white ones. We prove that such a modification can be consistently…

Quantum Physics · Physics 2009-11-07 Angelo Bassi , GianCarlo Ghirardi

This paper investigates the long time dynamics of interacting particle systems subject to singular interactions. We consider a microscopic system of $N$ interacting point particles, where the time evolution of the joint distribution…

Analysis of PDEs · Mathematics 2024-12-10 Alexis Béjar-López , Alain Blaustein , Pierre-Emmanuel Jabin , Juan Soler

The theory of stochastic approximations form the theoretical foundation for studying convergence properties of many popular recursive learning algorithms in statistics, machine learning and statistical physics. Large deviations for…

Probability · Mathematics 2025-02-05 Henrik Hult , Adam Lindhe , Pierre Nyquist , Guo-Jhen Wu

Several aspects of regularity theory for parabolic systems are investigated under the effect of random perturbations. The deterministic theory, when strict parabolicity is assumed, presents both classes of systems where all weak solutions…

Analysis of PDEs · Mathematics 2011-08-02 Lisa Beck , Franco Flandoli

The foundations of weak turbulence theory is explored through its application to the (alpha) Fermi-Pasta-Ulam (FPU) model, a simple weakly nonlinear dispersive system. A direct application of the standard kinetic equations would miss…

Chaotic Dynamics · Physics 2007-05-23 Peter R. Kramer , Joseph A. BIello , Yury Lvov

The currently existing theory of fluorescence correlation spectroscopy(FCS) is based on the linear fluctuation theory originally developed by Einstein, Onsager, Lax, and others as a phenomenological approach to equilibrium fluctuations in…

Biological Physics · Physics 2015-04-01 Mauricio J. Del Razo , Wenxiao Pan , Hong Qian , Guang Lin

We apply the linear response theory developed in \cite{Ruelle} to analyze how a periodic signal of weak amplitude, superimposed upon a chaotic background, is transmitted in a network of non linearly interacting units. We numerically compute…

Statistical Mechanics · Physics 2009-11-10 B. Cessac , J. A. Sepulchre

Stochastic processes with renewal properties are powerful tools for modeling systems where memory effects and long-time correlations play a significant role. In this work, we study a broad class of renewal processes where a variable's value…

Statistical Mechanics · Physics 2025-10-15 Marco Bianucci , Mauro Bologna , Daniele Lagomarsino-Oneto , Riccardo Mannella

It is known that when the diffuse interface thickness $\epsilon$ vanishes, the sharp interface limit of the stochastic reaction-diffusion equation is formally a stochastic geometric flow. To capture and simulate such geometric flow, it is…

Numerical Analysis · Mathematics 2024-05-16 Jianbo Cui , Liying Sun

In this paper we consider stochastic Fokker-Planck Partial Differential Equations (PDEs), obtained as the mean-field limit of weakly interacting particle systems subjected to both independent (or idiosyncratic) and common Brownian noises.…

Probability · Mathematics 2024-05-17 François Delarue , Etienne Tanré , Raphaël Maillet

We study the choice of the regularisation parameter for linear ill-posed problems in the presence of noise that is possibly unbounded but only finite in a weaker norm, and when the noise-level is unknown. For this task, we analyse several…

Numerical Analysis · Mathematics 2021-04-14 Stefan Kindermann , Kemal Raik

A mathematical model for the discrete nonlinear fragmentation (collision-induced breakage) equation with diffusion is studied. The existence of global weak solutions is established in arbitrary spatial dimensions without assuming a strictly…

Analysis of PDEs · Mathematics 2026-03-12 Saumyajit Das , Ram Gopal Jaiswal

We report on an experimental observation of classical diffusion distinguishing between structural universality classes of disordered systems in one dimension. Samples of hyperuniform and short-range disorder were designed, characterized by…

Mesoscale and Nanoscale Physics · Physics 2017-12-05 Antonios Papaioannou , Dmitry S. Novikov , Els Fieremans , Gregory S. Boutis

We describe how noise propagates through a network by calculating the variance of the outputs. Using stochastic calculus and dynamical systems theory, we study the network topologies that accentuate or alleviate the effect of random…

Molecular Networks · Quantitative Biology 2011-08-15 Dionysios Barmpoutis , Richard M. Murray

We prove pathwise convergence of the layerwise evolution of tokens in a finite-depth, finite-width transformer model with MultiLayer Perceptron (MLP) blocks to a continuous-time stochastic interacting particle system. We also identify the…

Probability · Mathematics 2026-04-30 Andrea Agazzi , Giuseppe Bruno , Eloy Mosig García , Samuele Saviozzi , Marco Romito

For large systems of Brownian particles interacting through their ranks introduced in (Banner, Fernholz, Karatzas, 2005), the empirical cumulative distribution function satisfies a porous medium PDE. However, when we introduce a common…

Probability · Mathematics 2019-05-13 Praveen Kolli , Andrey Sarantsev
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