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The integration of Multimodal Large Language Models (MLLMs) into chemistry promises to revolutionize scientific discovery, yet their ability to comprehend the dense, graphical language of reactions within authentic literature remains…

Computer Vision and Pattern Recognition · Computer Science 2026-01-29 Hanzheng Li , Xi Fang , Yixuan Li , Chaozheng Huang , Junjie Wang , Xi Wang , Hongzhe Bai , Bojun Hao , Shenyu Lin , Huiqi Liang , Linfeng Zhang , Guolin Ke

Reaction diagram parsing is the task of extracting reaction schemes from a diagram in the chemistry literature. The reaction diagrams can be arbitrarily complex, thus robustly parsing them into structured data is an open challenge. In this…

Computation and Language · Computer Science 2023-05-22 Yujie Qian , Jiang Guo , Zhengkai Tu , Connor W. Coley , Regina Barzilay

Multimodal Large Language Models (MLLMs) excel at recognizing individual visual elements and reasoning over simple linear diagrams. However, when faced with complex topological structures involving branching paths, converging flows, and…

Artificial Intelligence · Computer Science 2026-04-24 Qiang Xu , Shengyuan Bai , Yu Wang , He Cao , Leqing Chen , Yuanyuan Liu , Bin Feng , Zijing Liu , Yu Li

It is fundamental for science and technology to be able to predict chemical reactions and their properties. To achieve such skills, it is important to develop good representations of chemical reactions, or good deep learning architectures…

Machine Learning · Computer Science 2022-01-05 Mohammadamin Tavakoli , Alexander Shmakov , Francesco Ceccarelli , Pierre Baldi

While Large Language Models (LLMs) have revolutionized scientific text processing, they exhibit a significant capability gap when interpreting chemical reaction diagrams. We identify two fundamental bottlenecks restricting current systems:…

Artificial Intelligence · Computer Science 2026-05-19 Mingyang Rao , Kehua Feng , Zhihui Zhu , Jiangzhen Fu , Hao Yu , Keyan Ding , Huajun Chen

Multimodal Large Language Models (MLLMs) struggle with precise reasoning for structured visuals like charts and diagrams, as pixel-based perception lacks a mechanism for verification. To address this, we propose to leverage derendering --…

Computer Vision and Pattern Recognition · Computer Science 2026-03-11 Junhong Shen , Mu Cai , Bo Hu , Ameet Talwalkar , David A Ross , Cordelia Schmid , Alireza Fathi

Knowledge graphs are widely used in industrial applications, making error detection crucial for ensuring the reliability of downstream applications. Existing error detection methods often fail to effectively utilize fine-grained subgraph…

Artificial Intelligence · Computer Science 2025-11-20 Yu Li , Yi Huang , Guilin Qi , Junlan Feng , Nan Hu , Songlin Zhai , Haohan Xue , Yongrui Chen , Ruoyan Shen , Tongtong Wu

Artificial intelligence (AI) has demonstrated significant promise in advancing organic chemistry research; however, its effectiveness depends on the availability of high-quality chemical reaction data. Currently, most published chemical…

Computer Vision and Pattern Recognition · Computer Science 2025-03-12 Yufan Chen , Ching Ting Leung , Jianwei Sun , Yong Huang , Linyan Li , Hao Chen , Hanyu Gao

Question answering over visually rich documents (VRDs) requires reasoning not only over isolated content but also over documents' structural organization and cross-page dependencies. However, conventional retrieval-augmented generation…

Computation and Language · Computer Science 2026-03-03 Zhivar Sourati , Zheng Wang , Marianne Menglin Liu , Yazhe Hu , Mengqing Guo , Sujeeth Bharadwaj , Kyu Han , Tao Sheng , Sujith Ravi , Morteza Dehghani , Dan Roth

Large Language Models (LLMs) and their multimodal variants (LVLMs) hold immense promise for scientific and engineering applications, particularly in processing visual information like scientific diagrams. However, their practical deployment…

Computer Vision and Pattern Recognition · Computer Science 2025-08-26 Minghao Zhou , Rafael Souza , Yaqian Hu , Luming Che

The dominant paradigm of monolithic scaling in Vision-Language Models (VLMs) is failing for understanding and reasoning in documents, yielding diminishing returns as it struggles with the inherent need of this domain for document-based…

Computer Vision and Pattern Recognition · Computer Science 2025-11-17 Xinlei Yu , Chengming Xu , Zhangquan Chen , Yudong Zhang , Shilin Lu , Cheng Yang , Jiangning Zhang , Shuicheng Yan , Xiaobin Hu

Large-scale chemical reaction datasets are crucial for AI research in chemistry. However, existing chemical reaction data often exist as images within papers, making them not machine-readable and unusable for training machine learning…

Computer Vision and Pattern Recognition · Computer Science 2026-01-07 Jiahe Song , Chuang Wang , Bowen Jiang , Yinfan Wang , Hao Zheng , Xingjian Wei , Chengjin Liu , Rui Nie , Junyuan Gao , Jiaxing Sun , Yubin Wang , Lijun Wu , Zhenhua Huang , Jiang Wu , Qian Yu , Conghui He

Multimodal large language models often struggle with faithful reasoning in complex visual scenes, where intricate entities and relations require precise visual grounding at each step. This reasoning unfaithfulness frequently manifests as…

Computer Vision and Pattern Recognition · Computer Science 2026-01-12 Chuhan Wang , Xintong Li , Jennifer Yuntong Zhang , Junda Wu , Chengkai Huang , Lina Yao , Julian McAuley , Jingbo Shang

Agentic systems offer a potential path to solve complex clinical tasks through collaboration among specialized agents, augmented by tool use and external knowledge bases. Nevertheless, for chest X-ray (CXR) interpretation, prevailing…

Multiagent Systems · Computer Science 2026-04-16 Kai Zhang , Corey D Barrett , Jangwon Kim , Lichao Sun , Tara Taghavi , Krishnaram Kenthapadi

To fully expedite AI-powered chemical research, high-quality chemical databases are the foundation. Automatic extraction of chemical information from the literature is essential for constructing reaction databases, but it is currently…

Artificial Intelligence · Computer Science 2026-03-09 Yufan Chen , Ching Ting Leung , Bowen Yu , Jianwei Sun , Yong Huang , Linyan Li , Hao Chen , Hanyu Gao

Reaction virtual screening and discovery are fundamental challenges in chemistry and materials science, where traditional graph neural networks (GNNs) struggle to model multi-reactant interactions. In this work, we propose ChemHGNN, a…

Machine Learning · Computer Science 2025-06-16 Xiaobao Huang , Yihong Ma , Anjali Gurajapu , Jules Schleinitz , Zhichun Guo , Sarah E. Reisman , Nitesh V. Chawla

Machine reading comprehension (MRC) poses new challenges over logical reasoning, which aims to understand the implicit logical relations entailed in the given contexts and perform inference over them. Due to the complexity of logic, logical…

Computation and Language · Computer Science 2023-06-22 Jialin Chen , Zhuosheng Zhang , Hai Zhao

Deep learning-based reaction predictors have undergone significant architectural evolution. However, their reliance on reactions from the US Patent Office results in a lack of interpretable predictions and limited generalization capability…

Multimodal large language models have recently shown promising progress in visual mathematical reasoning. However, their performance is often limited by a critical yet underexplored bottleneck: inaccurate visual perception. Through…

Artificial Intelligence · Computer Science 2026-03-10 Peijin Xie , Zhen Xu , Bingquan Liu , Baoxun Wang

Multimodal document question answering requires retrieving dispersed evidence from visually rich long documents and performing reliable reasoning over heterogeneous information. Existing multimodal RAG systems remain limited by two…

Information Retrieval · Computer Science 2026-03-18 Jiashu Yang , Chi Zhang , Abudukelimu Wuerkaixi , Xuxin Cheng , Cao Liu , Ke Zeng , Xu Jia , Xunliang Cai
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