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Predicting the behavior of complex systems is critical in many scientific and engineering domains, and hinges on the model's ability to capture their underlying dynamics. Existing methods encode the intrinsic dynamics of high-dimensional…

Computational Engineering, Finance, and Science · Computer Science 2025-11-18 Jingwen Cheng , Ruikun Li , Huandong Wang , Yong Li

Sparse autoencoders (SAEs) have been used widely to decompose and interpret neural network activations, especially those of transformer language models. One key issue with SAEs is their inability to directly model multidimensional features.…

Machine Learning · Computer Science 2026-05-12 Collin Francel

Sparse autoencoders (SAEs) are a promising unsupervised approach for identifying causally relevant and interpretable linear features in a language model's (LM) activations. To be useful for downstream tasks, SAEs need to decompose LM…

Machine Learning · Computer Science 2024-08-02 Senthooran Rajamanoharan , Tom Lieberum , Nicolas Sonnerat , Arthur Conmy , Vikrant Varma , János Kramár , Neel Nanda

Sparse Autoencoders (SAEs) have become an important tool in mechanistic interpretability, helping to analyze internal representations in both Large Language Models (LLMs) and Vision Transformers (ViTs). By decomposing polysemantic…

Machine Learning · Computer Science 2026-05-11 Jakub Stępień , Marcin Mazur , Jacek Tabor , Przemysław Spurek

Sparse Autoencoder (SAE) has emerged as a powerful tool for mechanistic interpretability of large language models. Recent works apply SAE to protein language models (PLMs), aiming to extract and analyze biologically meaningful features from…

Quantitative Methods · Quantitative Biology 2026-01-21 Xiangyu Liu , Haodi Lei , Yi Liu , Yang Liu , Wei Hu

Sparse autoencoders (SAEs) have recently emerged as a powerful tool for interpreting the internal representations of large language models (LLMs), revealing latent latent features with semantical meaning. This interpretability has also…

Other Quantitative Biology · Quantitative Biology 2025-07-11 Haoxiang Guan , Jiyan He , Jie Zhang

Diffusion models have attained impressive visual quality for image synthesis. However, how to interpret and manipulate the latent space of diffusion models has not been extensively explored. Prior work diffusion autoencoders encode the…

Computer Vision and Pattern Recognition · Computer Science 2023-04-26 Zeyu Lu , Chengyue Wu , Xinyuan Chen , Yaohui Wang , Lei Bai , Yu Qiao , Xihui Liu

Sparse Autoencoders (SAEs) are widely employed for mechanistic interpretability and model steering. Within this context, steering is by design performed by means of decoding altered SAE intermediate representations. This procedure…

Machine Learning · Computer Science 2025-12-08 Antonio Bărbălau , Cristian Daniel Păduraru , Teodor Poncu , Alexandru Tifrea , Elena Burceanu

Sparse autoencoders (SAEs) provide a powerful mechanism for decomposing the dense representations produced by Large Language Models (LLMs) into interpretable latent features. We posit that SAEs constitute a natural foundation for Learned…

Machine Learning · Computer Science 2026-03-17 Thibault Formal , Maxime Louis , Hervé Dejean , Stéphane Clinchant

Sparse autoencoders (SAEs) have recently become central tools for interpretability, leveraging dictionary learning principles to extract sparse, interpretable features from neural representations whose underlying structure is typically…

Machine Learning · Computer Science 2025-11-05 Valérie Costa , Thomas Fel , Ekdeep Singh Lubana , Bahareh Tolooshams , Demba Ba

Pathology plays an important role in disease diagnosis, treatment decision-making and drug development. Previous works on interpretability for machine learning models on pathology images have revolved around methods such as attention value…

Sparse Autoencoders (SAEs) have emerged as a predominant tool in mechanistic interpretability, aiming to identify interpretable monosemantic features. However, how does sparse encoding organize the representations of activation vector from…

Machine Learning · Computer Science 2025-05-29 Wenjie Sun , Bingzhe Wu , Zhile Yang , Chengke Wu

Diffusion-based methods represented as stochastic differential equations on a continuous-time domain have recently proven successful as a non-adversarial generative model. Training such models relies on denoising score matching, which can…

Machine Learning · Computer Science 2024-11-05 Sarthak Mittal , Korbinian Abstreiter , Stefan Bauer , Bernhard Schölkopf , Arash Mehrjou

We introduce sparse autoencoder neural operators (SAE-NOs), a new class of sparse autoencoders that operate in function spaces rather than fixed-dimensional Euclidean representations. We formalize the functional representation hypothesis,…

Machine Learning · Computer Science 2026-05-11 Bahareh Tolooshams , Ailsa Shen , Anima Anandkumar

Representation Autoencoders (RAEs) have shown distinct advantages in diffusion modeling on ImageNet by training in high-dimensional semantic latent spaces. In this work, we investigate whether this framework can scale to large-scale,…

Computer Vision and Pattern Recognition · Computer Science 2026-01-23 Shengbang Tong , Boyang Zheng , Ziteng Wang , Bingda Tang , Nanye Ma , Ellis Brown , Jihan Yang , Rob Fergus , Yann LeCun , Saining Xie

A key barrier to interpreting large language models is polysemanticity, where neurons activate for multiple unrelated concepts. Sparse autoencoders (SAEs) have been proposed to mitigate this issue by transforming dense activations into…

Machine Learning · Computer Science 2025-10-20 Moghis Fereidouni , Muhammad Umair Haider , Peizhong Ju , A. B. Siddique

Sparse autoencoders (SAEs) are a technique for sparse decomposition of neural network activations into human-interpretable features. However, current SAEs suffer from feature absorption, where specialized features capture instances of…

Machine Learning · Computer Science 2025-09-29 Anton Korznikov , Andrey Galichin , Alexey Dontsov , Oleg Rogov , Elena Tutubalina , Ivan Oseledets

Sparse Auto-Encoders (SAEs) are commonly employed in mechanistic interpretability to decompose the residual stream into monosemantic SAE latents. Recent work demonstrates that perturbing a model's activations at an early layer results in a…

Machine Learning · Computer Science 2024-11-19 Giorgi Giglemiani , Nora Petrova , Chatrik Singh Mangat , Jett Janiak , Stefan Heimersheim

Internal activations of diffusion models encode rich semantic information, but interpreting such representations remains challenging. While Sparse Autoencoders (SAEs) have shown promise in disentangling latent representations, existing…

Machine Learning · Computer Science 2026-01-23 Zhenghao He , Guangzhi Xiong , Boyang Wang , Sanchit Sinha , Aidong Zhang

Diffusion autoencoders (DAs) are variants of diffusion generative models that use an input-dependent latent variable to capture representations alongside the diffusion process. These representations, to varying extents, can be used for…

Machine Learning · Computer Science 2025-06-03 Magdalena Proszewska , Nikolay Malkin , N. Siddharth
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