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Spatial transcriptomics assays are rapidly increasing in scale and complexity, making computational analysis a major bottleneck in biological discovery. Although frontier AI agents have improved dramatically at software engineering and…

Artificial Intelligence · Computer Science 2026-01-06 Kenny Workman , Zhen Yang , Harihara Muralidharan , Hannah Le

Drug recommendation requires a deep understanding of individual patient context, especially for complex conditions like Parkinson's disease. While LLMs possess broad medical knowledge, they fail to capture the subtle nuances of actual…

Computation and Language · Computer Science 2026-03-19 Chaeyoung Huh , Hyunmin Hwang , Jung Hwan Shin , Jinse Park , Jong Chul Ye

The Biomedical Entity Normalization (BEN) task aims to align raw, unstructured medical entities to standard entities, thus promoting data coherence and facilitating better downstream medical applications. Recently, prompt learning methods…

Computation and Language · Computer Science 2023-08-24 Songhua Yang , Chenghao Zhang , Hongfei Xu , Yuxiang Jia

Data-driven science is an emerging paradigm where scientific discoveries depend on the execution of computational AI models against rich, discipline-specific datasets. With modern machine learning frameworks, anyone can develop and execute…

Machine Learning · Computer Science 2022-08-09 Seth Ockerman , John Wu , Christopher Stewart

The computer-aided diagnosis (CAD) systems can highly improve the reliability and efficiency of melanoma recognition. As a crucial step of CAD, skin lesion segmentation has the unsatisfactory accuracy in existing methods due to large…

Computer Vision and Pattern Recognition · Computer Science 2018-10-17 Yujiao Tang , Feng Yang , Shaofeng Yuan , Chang'an Zhan

Existing visual grounding benchmarks primarily evaluate alignment between image regions and literal referring expressions, where models can often succeed by matching a prominent named category. We explore a complementary and more…

Computer Vision and Pattern Recognition · Computer Science 2026-04-03 Ruozhen He , Nisarg A. Shah , Qihua Dong , Zilin Xiao , Jaywon Koo , Vicente Ordonez

Over the past decades, improvements in data collection hardware coupled with novel artificial intelligence algorithms have made it possible for researchers to understand urban environments at an unprecedented scale. From local interactions…

Human-Computer Interaction · Computer Science 2024-10-30 Joao Rulff , Giancarlo Pereira , Maryam Hosseini , Marcos Lage , Claudio Silva

In this paper, we aim to extract commonsense knowledge to improve machine reading comprehension. We propose to represent relations implicitly by situating structured knowledge in a context instead of relying on a pre-defined set of…

Computation and Language · Computer Science 2020-10-20 Kai Sun , Dian Yu , Jianshu Chen , Dong Yu , Claire Cardie

We present M-Reason, a demonstration system for transparent, agent-based reasoning and evidence integration in the biomedical domain, with a focus on cancer research. M-Reason leverages recent advances in large language models (LLMs) and…

Artificial Intelligence · Computer Science 2025-10-08 Oskar Wysocki , Magdalena Wysocka , Mauricio Jacobo , Harriet Unsworth , André Freitas

Place recognition gives a SLAM system the ability to correct cumulative errors. Unlike images that contain rich texture features, point clouds are almost pure geometric information which makes place recognition based on point clouds…

Computer Vision and Pattern Recognition · Computer Science 2021-07-13 Lin Li , Xin Kong , Xiangrui Zhao , Tianxin Huang , Yong Liu

Document-Level Biomedical Relation Extraction (Bio-RE) aims to identify relations between biomedical entities within extensive texts, serving as a crucial subfield of biomedical text mining. Existing Bio-RE methods struggle with…

Computation and Language · Computer Science 2025-01-10 Yufei Shang , Yanrong Guo , Shijie Hao , Richang Hong

Scene understanding is a popular and challenging topic in both computer vision and photogrammetry. Scene graph provides rich information for such scene understanding. This paper presents a novel approach to infer such relations and then to…

Computer Vision and Pattern Recognition · Computer Science 2017-11-17 Michael Ying Yang , Wentong Liao , Hanno Ackermann , Bodo Rosenhahn

Biomedical events describe complex interactions between various biomedical entities. Event trigger is a word or a phrase which typically signifies the occurrence of an event. Event trigger identification is an important first step in all…

Computation and Language · Computer Science 2017-05-29 Patchigolla V S S Rahul , Sunil Kumar Sahu , Ashish Anand

Cognition does not only depend on bottom-up sensor feature abstraction, but also relies on contextual information being passed top-down. Context is higher level information that helps to predict belief states at lower levels. The main…

Artificial Intelligence · Computer Science 2018-01-09 Bernhard Hengst , Maurice Pagnucco , David Rajaratnam , Claude Sammut , Michael Thielscher

Scene labeling is the problem of assigning an object label to each pixel. It unifies the image segmentation and object recognition problems. The importance of using contextual information in scene labeling frameworks has been widely…

Computer Vision and Pattern Recognition · Computer Science 2014-02-05 Mojtaba Seyedhosseini , Tolga Tasdizen

Semantic scene completion (SSC) is a challenging Computer Vision task with many practical applications, from robotics to assistive computing. Its goal is to infer the 3D geometry in a field of view of a scene and the semantic labels of…

Computer Vision and Pattern Recognition · Computer Science 2021-11-29 Aloisio Dourado , Frederico Guth , Teofilo de Campos

Knowledge-based recommendation models effectively alleviate the data sparsity issue leveraging the side information in the knowledge graph, and have achieved considerable performance. Nevertheless, the knowledge graphs used in previous…

Information Retrieval · Computer Science 2024-03-28 Shenghao Yang , Weizhi Ma , Peijie Sun , Min Zhang , Qingyao Ai , Yiqun Liu , Mingchen Cai

Knowledge graphs are powerful tools for representing and organising complex biomedical data. Several knowledge graph embedding algorithms have been proposed to learn from and complete knowledge graphs. However, a recent study demonstrates…

Sequential recommendation models are crucial for next-item recommendations in online platforms, capturing complex patterns in user interactions. However, many focus on a single behavior, overlooking valuable implicit interactions like…

Information Retrieval · Computer Science 2023-12-18 Shereen Elsayed , Ahmed Rashed , Lars Schmidt-Thieme

Recent advances in deep research systems enable large language models to retrieve, synthesize, and reason over large-scale external knowledge. In medicine, developing clinical guidelines critically depends on such deep evidence integration.…