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We propose a metric for the space of multiple sequence alignments that can be used to compare two alignments to each other. In the case where one of the alignments is a reference alignment, the resulting accuracy measure improves upon…

Quantitative Methods · Quantitative Biology 2011-11-09 Ariel S. Schwartz , Eugene W. Myers , Lior Pachter

Positive linear programs (LP), also known as packing and covering linear programs, are an important class of problems that bridges computer science, operations research, and optimization. Despite the consistent efforts on this problem, all…

Data Structures and Algorithms · Computer Science 2016-11-15 Zeyuan Allen-Zhu , Lorenzo Orecchia

While reachability analysis is one of the most promising approaches for formal verification of dynamic systems, a major disadvantage preventing a more widespread application is the requirement to manually tune algorithm parameters such as…

Logic in Computer Science · Computer Science 2024-04-09 Niklas Kochdumper , Stanley Bak

The subject of this paper is to study conformance checking for timed models, that is, process models that consider both the sequence of events in a process as well as the timestamps at which each event is recorded. Time-aware process mining…

Formal Languages and Automata Theory · Computer Science 2022-07-06 Thomas Chatain , Neha Rino

Conformance checking deals with collating modeled process behavior with observed process behavior recorded in event data. Alignments are a state-of-the-art technique to detect, localize, and quantify deviations in process executions, i.e.,…

Software Engineering · Computer Science 2022-11-23 Daniel Schuster , Niklas Föcking , Sebastiaan J. van Zelst , Wil M. P. van der Aalst

Joint object matching, also known as multi-image matching, namely, the problem of finding consistent partial maps among all pairs of objects within a collection, is a crucial task in many areas of computer vision. This problem subsumes…

Optimization and Control · Mathematics 2022-11-29 Antonio De Rosa , Aida Khajavirad

Approximate linear programming (ALP) is an efficient approach to solving large factored Markov decision processes (MDPs). The main idea of the method is to approximate the optimal value function by a set of basis functions and optimize…

Artificial Intelligence · Computer Science 2012-06-18 Branislav Kveton , Milos Hauskrecht

Schema matching is the process of identifying correspondences between the elements of two given schemata, essential for database management systems, data integration, and data warehousing. For datasets across different scenarios, the…

Databases · Computer Science 2025-03-07 Longyu Feng , Huahang Li , Chen Jason Zhang

The paper aims at the development of an apparatus for analysis and construction of near optimal solutions of singularly perturbed (SP) optimal controls problems (that is, problems of optimal control of SP systems) considered on the infinite…

Optimization and Control · Mathematics 2014-08-20 Vladimir Gaitsgory , Sergei Rossomakhine

Process mining leverages event data extracted from IT systems to generate insights into the business processes of organizations. Such insights benefit from explicitly considering the frequency of behavior in business processes, which is…

Formal Languages and Automata Theory · Computer Science 2025-07-10 Tian Li , Artem Polyvyanyy , Sander J. J. Leemans

Conformal prediction is a statistical tool for producing prediction regions of machine learning models that are valid with high probability. However, applying conformal prediction to time series data leads to conservative prediction…

Systems and Control · Electrical Eng. & Systems 2024-01-10 Matthew Cleaveland , Insup Lee , George J. Pappas , Lars Lindemann

Conformance checking techniques aim to collate observed process behavior with normative/modeled process models. The majority of existing approaches focuses on completed process executions, i.e., offline conformance checking. Recently, novel…

Logic in Computer Science · Computer Science 2022-11-23 Daniel Schuster , Gero J. Kolhof

In process mining, alignments quantify the degree of deviation between an observed event trace and a business process model and constitute the most important conformance checking technique. We study the algorithmic complexity of computing…

Formal Languages and Automata Theory · Computer Science 2026-03-06 Christopher T. Schwanen , Wied Pakusa , Wil M. P. van der Aalst

In the development of industrial digital twins, the optimization problem of technological and business processes often arises. In many cases, this problem can be reduced to a large-scale linear programming (LP) problem. The article is…

Optimization and Control · Mathematics 2021-02-16 Leonid B. Sokolinsky , Irina M. Sokolinskaya

In this paper we introduce a new operation for Linear Programming (LP), called LP complementation, which resembles many properties of LP duality. Given a maximisation (resp.~minimisation) LP $P$, we define its complement $Q$ as a specific…

Combinatorics · Mathematics 2022-04-08 Maximilien Gadouleau , George B. Mertzios , Viktor Zamaraev

Many problems in machine learning can be solved by rounding the solution of an appropriate linear program (LP). This paper shows that we can recover solutions of comparable quality by rounding an approximate LP solution instead of the ex-…

Numerical Analysis · Computer Science 2013-11-19 Srikrishna Sridhar , Victor Bittorf , Ji Liu , Ce Zhang , Christopher Ré , Stephen J. Wright

The linear programming (LP) approach has a long history in the theory of approximate dynamic programming. When it comes to computation, however, the LP approach often suffers from poor scalability. In this work, we introduce a relaxed…

Systems and Control · Electrical Eng. & Systems 2020-12-01 Andrea Martinelli , Matilde Gargiani , John Lygeros

Linear Programming (LP) is widely applied in industry and is a key component of various other mathematical problem-solving techniques. Recent work introduced an LP compiler translating polynomial-time, polynomial-space algorithms into…

Programming Languages · Computer Science 2025-09-17 Shermin Khosravi , David Bremner

Pattern matching is a fundamental process in almost every scientific domain. The problem involves finding the positions of a given pattern (usually of short length) in a reference stream of data (usually of large length). The matching can…

Data Structures and Algorithms · Computer Science 2022-07-01 Anas Al-okaily , Abdelghani Tbakhi

Context: Ensuring high levels of dependability in modern computer-based systems has become increasingly challenging due to their complexity. Although systems are validated at design time, their behavior can be different at runtime, possibly…

Software Engineering · Computer Science 2026-03-30 Francesco Vitale , Francesco Flammini , Mauro Caporuscio , Nicola Mazzocca