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Program optimization is the process of modifying software to execute more efficiently. Superoptimizers attempt to find the optimal program by employing significantly more expensive search and constraint solving techniques. Generally, these…

Machine Learning · Computer Science 2022-04-06 Alex Shypula , Pengcheng Yin , Jeremy Lacomis , Claire Le Goues , Edward Schwartz , Graham Neubig

The importance of learning rate (LR) schedules on network pruning has been observed in a few recent works. As an example, Frankle and Carbin (2019) highlighted that winning tickets (i.e., accuracy preserving subnetworks) can not be found…

Machine Learning · Computer Science 2023-01-03 Shiyu Liu , Rohan Ghosh , John Tan Chong Min , Mehul Motani

Lead optimization in drug discovery requires efficiently navigating vast chemical space through iterative cycles to enhance molecular properties while preserving structural similarity to the original lead compound. Despite recent advances,…

Machine Learning · Computer Science 2025-09-29 Ziqing Wang , Yibo Wen , William Pattie , Xiao Luo , Weimin Wu , Jerry Yao-Chieh Hu , Abhishek Pandey , Han Liu , Kaize Ding

The legality of training language models (LMs) on copyrighted or otherwise restricted data is under intense debate. However, as we show, model performance significantly degrades if trained only on low-risk text (e.g., out-of-copyright books…

Computation and Language · Computer Science 2024-08-01 Sewon Min , Suchin Gururangan , Eric Wallace , Weijia Shi , Hannaneh Hajishirzi , Noah A. Smith , Luke Zettlemoyer

Directed evolution is a versatile technique in protein engineering that mimics the process of natural selection by iteratively alternating between mutagenesis and screening in order to search for sequences that optimize a given property of…

Biomolecules · Quantitative Biology 2024-05-02 Lixue Cheng , Ziyi Yang , Changyu Hsieh , Benben Liao , Shengyu Zhang

Some imitation learning methods combine behavioural cloning with self-supervision to infer actions from state pairs. However, most rely on a large number of expert trajectories to increase generalisation and human intervention to capture…

Machine Learning · Computer Science 2024-07-23 Nathan Gavenski , Juarez Monteiro , Felipe Meneguzzi , Michael Luck , Odinaldo Rodrigues

Scientific computing applications heavily rely on multi-level loop nests operating on multidimensional arrays. This presents multiple optimization opportunities from exploiting parallelism to reducing data movement through prefetching and…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-11 Philipp Schaad , Tal Ben-Nun , Patrick Iff , Torsten Hoefler

Protein generative models have shown remarkable promise in protein design, yet their success rates remain constrained by reliance on curated sequence-structure datasets and by misalignment between supervised objectives and real design…

Machine Learning · Computer Science 2026-03-03 Ziwen Wang , Jiajun Fan , Ruihan Guo , Thao Nguyen , Heng Ji , Ge Liu

Optimizing the structure of molecules to achieve desired properties is a central bottleneck across the chemical sciences, particularly in the pharmaceutical industry where it underlies the discovery of new drugs. Since molecular property…

Artificial Intelligence · Computer Science 2026-02-19 Fabian P. Krüger , Andrea Hunklinger , Adrian Wolny , Tim J. Adler , Igor Tetko , Santiago David Villalba

Reinforcement Learning with Verifiable Rewards (RLVR) has become a central post-training paradigm for improving the reasoning capabilities of large language models. Yet existing methods share a common blind spot: they optimize policies…

Machine Learning · Computer Science 2026-04-29 Huaiyang Wang , Xiaojie Li , Deqing Wang , Haoyi Zhou , Zixuan Huang , Yaodong Yang , Jianxin Li , Yikun Ban

Protein fitness optimization involves finding a protein sequence that maximizes desired quantitative properties in a combinatorially large design space of possible sequences. Recent advances in steering protein generative models (e.g.,…

Biomolecules · Quantitative Biology 2025-10-22 Jason Yang , Wenda Chu , Daniel Khalil , Raul Astudillo , Bruce J. Wittmann , Frances H. Arnold , Yisong Yue

Navigating vast, rugged biological fitness landscapes to discover high-value functional patterns-such as optimal protein sequences-is a central challenge in health informatics. However, conventional algorithms often struggle with the…

Neural and Evolutionary Computing · Computer Science 2025-11-25 Xu Wang , Yiquan Wang , Tin-Yeh Huang , Yuhua Dong , Jia Deng , Longji Xu , Xiang Li , Rui He

Existing LLM-based policy optimizers see only scalar rewards: that a policy scored 0.45, but not whether the agent got stuck in a loop, fell into a hole on the third step, or performed well on 19 out of 20 rollouts and failed…

Machine Learning · Computer Science 2026-05-12 Rahaf Abu Hara , Vaibbhav Murarri , Claudio Zito

Well-designed prompts are crucial for enhancing Large language models' (LLMs) reasoning capabilities while aligning their outputs with task requirements across diverse domains. However, manually designed prompts require expertise and…

Computation and Language · Computer Science 2025-08-22 Jinyu Xiang , Jiayi Zhang , Zhaoyang Yu , Xinbing Liang , Fengwei Teng , Jinhao Tu , Fashen Ren , Xiangru Tang , Sirui Hong , Chenglin Wu , Yuyu Luo

RL-based post-training of language models is almost exclusively done using on-policy methods such as PPO. These methods cannot learn from arbitrary sequences such as those produced earlier in training, in earlier runs, by human experts or…

Machine Learning · Computer Science 2025-03-10 Taco Cohen , David W. Zhang , Kunhao Zheng , Yunhao Tang , Remi Munos , Gabriel Synnaeve

Improving the alignment of language models with human preferences remains an active research challenge. Previous approaches have primarily utilized Reinforcement Learning from Human Feedback (RLHF) via online RL methods such as Proximal…

Computation and Language · Computer Science 2024-01-25 Tianqi Liu , Yao Zhao , Rishabh Joshi , Misha Khalman , Mohammad Saleh , Peter J. Liu , Jialu Liu

We present a predictor-corrector framework, called PicCoLO, that can transform a first-order model-free reinforcement or imitation learning algorithm into a new hybrid method that leverages predictive models to accelerate policy learning.…

Machine Learning · Computer Science 2019-05-28 Ching-An Cheng , Xinyan Yan , Nathan Ratliff , Byron Boots

Training deep networks and tuning hyperparameters on large datasets is computationally intensive. One of the primary research directions for efficient training is to reduce training costs by selecting well-generalizable subsets of training…

Enhancing the conformity of large language models (LLMs) to human preferences remains an ongoing research challenge. Recently, offline approaches such as Direct Preference Optimization (DPO) have gained prominence as attractive options due…

Machine Learning · Computer Science 2024-09-05 Kaihui Chen , Hao Yi , Qingyang Li , Tianyu Qi , Yulan Hu , Fuzheng Zhang , Yong Liu

Reinforcement learning with verifiable rewards has become the standard recipe for improving LLM reasoning, but the dominant algorithm GRPO assigns a single trajectory-level advantage to every token, diluting the signal at pivotal reasoning…

Machine Learning · Computer Science 2026-05-25 Yu Li , Rui Miao , Tian Lan , Zhengling Qi
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