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Finding complete subgraphs in a graph, that is, cliques, is a key problem and has many real-world applications, e.g., finding communities in social networks, clustering gene expression data, modeling ecological niches in food webs, and…

Optimization and Control · Mathematics 2017-05-01 Melisew Tefera Belachew , Nicolas Gillis

Dense subgraph extraction is a fundamental problem in graph analysis and data mining, aimed at identifying cohesive and densely connected substructures within a given graph. It plays a crucial role in various domains, including social…

Data Structures and Algorithms · Computer Science 2024-03-01 Chia-Yang Hung , Chih-Ya Shen

Given a large graph, the densest-subgraph problem asks to find a subgraph with maximum average degree. When considering the top-$k$ version of this problem, a na\"ive solution is to iteratively find the densest subgraph and remove it in…

Data Structures and Algorithms · Computer Science 2017-08-30 Muhammad Anis Uddin Nasir , Aristides Gionis , Gianmarco De Francisci Morales , Sarunas Girdzijauskas

Computing a maximum independent set (MaxIS) is a fundamental NP-hard problem in graph theory, which has important applications in a wide spectrum of fields. Since graphs in many applications are changing frequently over time, the problem of…

Data Structures and Algorithms · Computer Science 2022-04-19 Xiangyu Gao , Jianzhong Li , Dongjing Miao

In distributed networks, it is often useful for the nodes to be aware of dense subgraphs, e.g., such a dense subgraph could reveal dense subtructures in otherwise sparse graphs (e.g. the World Wide Web or social networks); these might…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-08-08 Atish Das Sarma , Ashwin Lall , Danupon Nanongkai , Amitabh Trehan

The maximum clique problem is a well known NP-Hard problem with applications in data mining, network analysis, informatics, and many other areas. Although there exist several algorithms with acceptable runtimes for certain classes of…

Data Structures and Algorithms · Computer Science 2012-11-15 Bharath Pattabiraman , Md. Mostofa Ali Patwary , Assefaw H. Gebremedhin , Wei-keng Liao , Alok Choudhary

The Automatic Quasi-clique Merger algorithm is a new algorithm adapted from early work published under the name QCM (quasi-clique merger) [Ou2006, Ou2007, Zhao2011, Qi2014]. The AQCM algorithm performs hierarchical clustering in any data…

Machine Learning · Computer Science 2021-03-09 Scott Payne , Edgar Fuller , George Spirou , Cun-Quan Zhang

Densest subgraph discovery (DSD) is a fundamental problem in graph mining. It has been studied for decades, and is widely used in various areas, including network science, biological analysis, and graph databases. Given a graph G, DSD aims…

Databases · Computer Science 2019-08-08 Yixiang Fang , Kaiqiang Yu , Reynold Cheng , Laks V. S. Lakshmanan , Xuemin Lin

We give the first fully dynamic algorithm which maintains a $(1-\epsilon)$-approximate densest subgraph in worst-case time $\text{poly}(\log n, \epsilon^{-1})$ per update. Dense subgraph discovery is an important primitive for many…

Data Structures and Algorithms · Computer Science 2020-03-12 Saurabh Sawlani , Junxing Wang

We present a new parallel algorithm for $k$-clique counting/listing that has polylogarithmic span (parallel time) and is work-efficient (matches the work of the best sequential algorithm) for sparse graphs. Our algorithm is based on…

Data Structures and Algorithms · Computer Science 2021-07-19 Jessica Shi , Laxman Dhulipala , Julian Shun

A canonical problem in graph mining is the detection of dense communities. This problem is exacerbated for a graph with a large order and size -- the number of vertices and edges -- as many community detection algorithms scale poorly. In…

Social and Information Networks · Computer Science 2015-02-17 Heng Wang , Da Zheng , Randal Burns , Carey Priebe

Finding dense subnetworks, with density based on edges or more complex structures, such as subgraphs or $k$-cliques, is a fundamental algorithmic problem with many applications. While the problem has been studied extensively in static…

Data Structures and Algorithms · Computer Science 2024-06-26 Ilie Sarpe , Fabio Vandin , Aristides Gionis

Discovering large cohesive subgraphs is a key task for graph mining. Existing models, such as clique, k-plex, and {\gamma}-quasi-clique, use fixed density thresholds that overlook the natural decay of connectivity as the subgraph size…

Social and Information Networks · Computer Science 2026-02-12 Song Kim , Hyewon Kim , Kaiqiang Yu , Taejoon Han , Junghoon Kim , Susik Yoon , Jungeun Kim

Given a query graph that represents a pattern of interest, the emerging pattern detection problem can be viewed as a continuous query problem on a dynamic graph. We present an incremental algorithm for continuous query processing on dynamic…

Databases · Computer Science 2014-07-15 Sutanay Choudhury , Lawrence Holder , George Chin , Patrick Mackey , Khushbu Agarwal , John Feo

Mining cohesive subgraphs in attributed graphs is an essential problem in the domain of graph data analysis. The integration of fairness considerations significantly fuels interest in models and algorithms for mining fairness-aware cohesive…

Databases · Computer Science 2023-12-08 Qi Zhang , Rong-Hua Li , Zifan Zheng , Hongchao Qin , Ye Yuan , Guoren Wang

Given a dynamic network, where edges appear and disappear over time, we are interested in finding sets of edges that have similar temporal behavior and form a dense subgraph. Formally, we define the problem as the enumeration of the maximal…

Social and Information Networks · Computer Science 2021-03-02 Giulia Preti , Polina Rozenshtein , Aristides Gionis , Yannis Velegrakis

We study dynamic graph algorithms in the Massively Parallel Computation model, which was inspired by practical data processing systems. Our goal is to provide algorithms that can efficiently handle large batches of edge insertions and…

Data Structures and Algorithms · Computer Science 2021-01-12 Krzysztof Nowicki , Krzysztof Onak

As a fundamental topic in graph mining, Densest Subgraph Discovery (DSD) has found a wide spectrum of real applications. Several DSD algorithms, including exact and approximation algorithms, have been proposed in the literature. However,…

Databases · Computer Science 2024-06-10 Yingli Zhou , Qingshuo Guo , Yi Yang , Yixiang Fang , Chenhao Ma , Laks Lakshmanan

This master thesis introduces the idea of dynamic cutoffs in molecular dynamics simulations, based on the distance between particles and the interface, and presents a solution for detecting interfaces in real-time. Our dynamic cutoff method…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-02-12 Paul Springer

This paper assesses the performance of the D-Wave 2X (DW) quantum annealer for finding a maximum clique in a graph, one of the most fundamental and important NP-hard problems. Because the size of the largest graphs DW can directly solve is…

Quantum Physics · Physics 2018-04-25 Guillaume Chapuis , Hristo N. Djidjev , Georg Hahn , Guillaume Rizk