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Theta-graphs are a type of spatial graph with two vertices connected by three edges. We investigate embeddings of theta-graphs in the square and simple cubic lattices, using a combination of the Wang-Landau Monte Carlo method with a variant…
We prove upper bounds on the order of convergence of lattice based algorithms for numerical integration in function spaces of dominating mixed smoothness on the unit cube with homogeneous boundary condition. More precisely, we study…
We consider intrinsic linking and knotting in the context of directed graphs. We construct an example of a directed graph that contains a consistently oriented knotted cycle in every embedding. We also construct examples of intrinsically…
We discuss a class of problems which we call lattice exit models. At one level, these problems provide undergraduate level exercises in labeling the vertices of graphs (e.g., depth first search). At another level (theorems about large scale…
We propose learning deep models that are monotonic with respect to a user-specified set of inputs by alternating layers of linear embeddings, ensembles of lattices, and calibrators (piecewise linear functions), with appropriate constraints…
We propose a local-to-global strategy for graph machine learning and network analysis by defining certain local features and vector representations of nodes and then using them to learn globally defined metrics and properties of the nodes…
Differential calculus on discrete sets is developed in the spirit of noncommutative geometry. Any differential algebra on a discrete set can be regarded as a `reduction' of the `universal differential algebra' and this allows a systematic…
Totally asymmetric simple exclusion processes on lattices with junctions, where particles interact with hard-core exclusion and move on parallel lattice branches that at the junction combine into a single lattice segment, are investigated.…
We introduce a new class of partial actions of free groups on totally disconnected compact Hausdorff spaces, which we call convex subshifts. These serve as an abstract framework for the partial actions associated with finite separated…
Bispanning graphs are undirected graphs with an edge set that can be decomposed into two disjoint spanning trees. The operation of symmetrically swapping two edges between the trees, such that the result is a different pair of disjoint…
We present a new model to realize artificial 2D lattices with cold atoms investigating the atomic artificial graphene: a 2D-confined matter wave is scattered by atoms of a second species trapped around the nodes of a honeycomb optical…
We adapt the classical 3-decomposition of any 2-connected graph to the case of simple graphs (no loops or multiple edges). By analogy with the block-cutpoint tree of a connected graph, we deduce from this decomposition a bicolored tree…
Lattice-linear systems allow nodes to execute asynchronously. We introduce eventually lattice-linear algorithms, where lattices are induced only among the states in a subset of the state space. The algorithm guarantees that the system…
We consider inhomogeneous lattice walk models in a half-space and in the quarter plane. For the models in a half-space, we show by a generalization of the kernel method to linear systems of functional equations that their generating…
Discrete Morse theory emerged as an essential tool for computational geometry and topology. Its core structures are discrete gradient fields, defined as acyclic matchings on a complex $C$, from which topological and geometrical informations…
A flip of a graph is obtained by complementing the edge relation within a set of vertices. Flips are typically used to separate vertices in a graph, by increasing the distances between them. We show that in $K_{t,t}$-free graphs, every…
We denote the matching complex of the complete graph with $n$ vertices by $M_n$. Bouc first studied the topological properties of $M_n$ in connection with the Quillen complex. Later Bj\"{o}rner, Lov\'{a}sz, Vre\'{c}ica, and…
A contact map is a simple representation of the structure of proteins and other chain-like macromolecules. This representation is quite amenable to numerical studies of folding. We show that the number of contact maps corresponding to the…
Rooted bifurcating trees are mathematical objects used to model evolutionary relationships and arise naturally in both coalescent theory and phylogenetics. Recent numerical representations of tree topologies, known as F-matrices, allow for…
Phylogenetic networks which are, as opposed to trees, suitable to describe processes like hybridization and horizontal gene transfer, play a substantial role in evolutionary research. However, while non-treelike events need to be taken into…