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Related papers: GEESE: Genotype-aware End-to-End Spatio-temporal E…

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We propose an algorithm, guided variational autoencoder (Guided-VAE), that is able to learn a controllable generative model by performing latent representation disentanglement learning. The learning objective is achieved by providing…

Computer Vision and Pattern Recognition · Computer Science 2020-04-06 Zheng Ding , Yifan Xu , Weijian Xu , Gaurav Parmar , Yang Yang , Max Welling , Zhuowen Tu

Deep learning has proven to successfully learn variations in tissue and cell morphology. Training of such models typically relies on expensive manual annotations. Here we conjecture that spatially resolved gene expression, e.i., the…

Quantitative Methods · Quantitative Biology 2023-12-11 Axel Andersson , Gabriele Partel , Leslie Solorzano , Carolina Wählby

Many genetic mutations adversely affect the structure and function of load-bearing soft tissues, with clinical sequelae often responsible for disability or death. Parallel advances in genetics and histomechanical characterization provide…

Tissues and Organs · Quantitative Biology 2023-01-11 Enrui Zhang , Bart Spronck , Jay D. Humphrey , George Em Karniadakis

We introduce a statistical method that can reconstruct nonlinear genetic models (i.e., including epistasis, or gene-gene interactions) from phenotype-genotype (GWAS) data. The computational and data resource requirements are similar to…

Genomics · Quantitative Biology 2015-09-29 Chiu Man Ho , Stephen D. H. Hsu

The characterization of dynamical processes in living systems provides important clues for their mechanistic interpretation and link to biological functions. Thanks to recent advances in microscopy techniques, it is now possible to…

Data Analysis, Statistics and Probability · Physics 2023-11-29 Jesús Pineda , Benjamin Midtvedt , Harshith Bachimanchi , Sergio Noé , Daniel Midtvedt , Giovanni Volpe , Carlo Manzo

To enhance the performance of affective models and reduce the cost of acquiring physiological signals for real-world applications, we adopt multimodal deep learning approach to construct affective models from multiple physiological signals.…

Human-Computer Interaction · Computer Science 2016-02-29 Wei Liu , Wei-Long Zheng , Bao-Liang Lu

With recent developments in smart technologies, there has been a growing focus on the use of artificial intelligence and machine learning for affective computing to further enhance the user experience through emotion recognition. Typically,…

Machine Learning · Computer Science 2020-08-26 Kyle Ross , Paul Hungler , Ali Etemad

Gigantic pre-trained models have become central to natural language processing (NLP), serving as the starting point for fine-tuning towards a range of downstream tasks. However, two pain points persist for this paradigm: (a) as the…

Machine Learning · Computer Science 2023-05-25 Xuxi Chen , Tianlong Chen , Weizhu Chen , Ahmed Hassan Awadallah , Zhangyang Wang , Yu Cheng

Gene expression profiling provides profound insights into molecular mechanisms, but its time-consuming and costly nature often presents significant challenges. In contrast, whole-slide hematoxylin and eosin (H&E) stained histological images…

Computer Vision and Pattern Recognition · Computer Science 2024-11-28 Ying Xiong , Linjing Liu , Yufei Cui , Shangyu Wu , Xue Liu , Antoni B. Chan , Chun Jason Xue

In the years since Goodfellow et al. introduced Generative Adversarial Networks (GANs), there has been an explosion in the breadth and quality of generative model applications. Despite this work, GANs still have a long way to go before they…

Machine Learning · Computer Science 2020-04-14 Conor Lazarou

3D pose transfer that aims to transfer the desired pose to a target mesh is one of the most challenging 3D generation tasks. Previous attempts rely on well-defined parametric human models or skeletal joints as driving pose sources. However,…

Computer Vision and Pattern Recognition · Computer Science 2024-04-04 Haoyu Chen , Hao Tang , Ehsan Adeli , Guoying Zhao

Gaze communication plays a crucial role in daily social interactions. Quantifying this behavior can help in human-computer interaction and digital phenotyping. While end-to-end models exist for gaze target detection, they only utilize a…

Computer Vision and Pattern Recognition · Computer Science 2025-08-19 Ryan Anthony Jalova de Belen , Gelareh Mohammadi , Arcot Sowmya

This thesis investigates unsupervised time series representation learning for sequence prediction problems, i.e. generating nice-looking input samples given a previous history, for high dimensional input sequences by decoupling the static…

Machine Learning · Computer Science 2018-04-19 Markus Beissinger

As a unique and promising biometric, video-based gait recognition has broad applications. The key step of this methodology is to learn the walking pattern of individuals, which, however, often suffers challenges to extract the behavioral…

Computer Vision and Pattern Recognition · Computer Science 2021-08-30 Xinnan Ding , Kejun Wang , Chenhui Wang , Tianyi Lan , Liangliang Liu

Mining tasks over sequential data, such as clickstreams and gene sequences, require a careful design of embeddings usable by learning algorithms. Recent research in feature learning has been extended to sequential data, where each instance…

Machine Learning · Computer Science 2020-07-28 Zhongfang Zhuang , Xiangnan Kong , Elke Rundensteiner , Jihane Zouaoui , Aditya Arora

Animal brains flexibly and efficiently achieve many behavioral tasks with a single neural network. A core goal in modern neuroscience is to map the mechanisms of the brain's flexibility onto the dynamics underlying neural populations.…

Neurons and Cognition · Quantitative Biology 2026-03-12 Anirudh Jamkhandi , Ali Korojy , Olivier Codol , Guillaume Lajoie , Matthew G. Perich

Generalizing motion representation across diverse characters remains challenging due to significant topological variations in skeletal structures across datasets and species, which hinder the development of scalable generative models. To…

Graphics · Computer Science 2026-05-27 Zongye Zhang , Yuzhuo Cui , Qingjie Liu , Yunhong Wang

Genotype-to-phenotype prediction is a central goal of statistical genetics, yet practical comparisons of prediction workflows remain limited in small, heterogeneous, participant-shared genomic datasets. Here, we benchmarked end-to-end…

Genomics · Quantitative Biology 2026-05-05 Muhammad Muneeb , David B. Ascher , YooChan Myung , Samuel F. Feng , Andreas Henschel

By composing graphical models with deep learning architectures, we learn generative models with the strengths of both frameworks. The structured variational autoencoder (SVAE) inherits structure and interpretability from graphical models,…

Machine Learning · Computer Science 2023-11-15 Harry Bendekgey , Gabriel Hope , Erik B. Sudderth

With the metaverse slowly becoming a reality and given the rapid pace of developments toward the creation of digital humans, the need for a principled style editing pipeline for human faces is bound to increase manifold. We cater to this…

Computer Vision and Pattern Recognition · Computer Science 2023-12-27 Snehal Singh Tomar , A. N. Rajagopalan
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