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The emergence of foundation models in neuroimaging is driven by the increasing availability of large-scale and heterogeneous brain imaging datasets. Recent advances in self-supervised learning, particularly reconstruction-based objectives,…

Machine Learning · Computer Science 2025-11-04 Ruthwik Reddy Doodipala , Pankaj Pandey , Carolina Torres Rojas , Manob Jyoti Saikia , Ranganatha Sitaram

The interpretability of neural networks has recently received extensive attention. Previous prototype-based explainable networks involved prototype activation in both reasoning and interpretation processes, requiring specific explainable…

Computer Vision and Pattern Recognition · Computer Science 2022-11-22 Yitao Peng , Yihang Liu , Longzhen Yang , Lianghua He

Visual generative models (e.g., diffusion models) typically operate in compressed latent spaces to balance training efficiency and sample quality. In parallel, there has been growing interest in leveraging high-quality pre-trained visual…

Computer Vision and Pattern Recognition · Computer Science 2025-12-17 Yuan Gao , Chen Chen , Tianrong Chen , Jiatao Gu

Missing input sequences are common in medical imaging data, posing a challenge for deep learning models reliant on complete input data. In this work, inspired by MultiMAE [2], we develop a masked autoencoder (MAE) paradigm for multi-modal,…

Computer Vision and Pattern Recognition · Computer Science 2026-02-04 Ayhan Can Erdur , Christian Beischl , Daniel Scholz , Jiazhen Pan , Benedikt Wiestler , Daniel Rueckert , Jan C Peeken

Image decomposition aims to analyze an image into elementary components, which is essential for numerous downstream tasks and also by nature provides certain interpretability to the analysis. Deep learning can be powerful for such tasks,…

Computer Vision and Pattern Recognition · Computer Science 2025-01-03 Sihan Wang , Shangqi Gao , Fuping Wu , Xiahai Zhuang

Neural operators aim to learn mappings between infinite-dimensional function spaces, but their performance often degrades on complex or irregular geometries due to the lack of geometry-aware representations. We propose the Finite Element…

Numerical Analysis · Mathematics 2026-02-03 Shiyuan Li , Hossein Salahshoor

Recent work has shown that feed-forward networks (FFNs) in pre-trained Transformers are a key component, storing various linguistic and factual knowledge. However, the computational patterns of FFNs are still unclear. In this work, we study…

Computation and Language · Computer Science 2022-04-06 Zhengyan Zhang , Yankai Lin , Zhiyuan Liu , Peng Li , Maosong Sun , Jie Zhou

The reconstruction of 3D objects from brain signals has gained significant attention in brain-computer interface (BCI) research. Current research predominantly utilizes functional magnetic resonance imaging (fMRI) for 3D reconstruction…

Graphics · Computer Science 2025-05-06 Xia Deng , Shen Chen , Jiale Zhou , Lei Li

Precision psychiatry aspires to elucidate brain-based biomarkers of psychopathology to bolster disease risk assessment and treatment development. To this end, functional magnetic resonance imaging (fMRI) has helped triangulate brain…

Neurons and Cognition · Quantitative Biology 2026-01-23 Cole Korponay

Advances on signal, image and video generation underly major breakthroughs on generative medical imaging tasks, including Brain Image Synthesis. Still, the extent to which functional Magnetic Ressonance Imaging (fMRI) can be mapped from the…

Machine Learning · Computer Science 2020-09-30 David Calhas , Rui Henriques

Fetal brain segmentation is an important first step for slice-level motion correction and slice-to-volume reconstruction in fetal MRI. Fast and accurate segmentation of the fetal brain on fetal MRI is required to achieve real-time fetal…

Image and Video Processing · Electrical Eng. & Systems 2022-05-05 Razieh Faghihpirayesh , Davood Karimi , Deniz Erdogmus , Ali Gholipour

Recent achievements in implantable brain-computer interfaces (iBCIs) have demonstrated the potential to decode cognitive and motor behaviors with intracranial brain recordings; however, individual physiological and electrode implantation…

Neurons and Cognition · Quantitative Biology 2025-06-17 Di Wu , Linghao Bu , Yifei Jia , Lu Cao , Siyuan Li , Siyu Chen , Yueqian Zhou , Sheng Fan , Wenjie Ren , Dengchang Wu , Kang Wang , Yue Zhang , Yuehui Ma , Jie Yang , Mohamad Sawan

Multimodal magnetic resonance imaging (MRI) constitutes the first line of investigation for clinicians in the care of brain tumors, providing crucial insights for surgery planning, treatment monitoring, and biomarker identification.…

Computer Vision and Pattern Recognition · Computer Science 2025-08-26 Lucas Robinet , Ahmad Berjaoui , Elizabeth Cohen-Jonathan Moyal

Visual neural decoding aims to extract and interpret original visual experiences directly from human brain activity. Recent studies have demonstrated the feasibility of decoding visual semantic categories from electroencephalography (EEG)…

Computer Vision and Pattern Recognition · Computer Science 2026-04-02 Hongzhou Chen , Lianghua He , Yihang Liu , Longzhen Yang , Shaohua Shang , MengChu Zhou

Brain decoding is a hot spot in cognitive science, which focuses on reconstructing perceptual images from brain activities. Analyzing the correlations of collected data from human brain activities and representing activity patterns are two…

Computer Vision and Pattern Recognition · Computer Science 2017-12-06 Siyu Yu , Nanning Zheng , Yongqiang Ma , Hao Wu , Badong Chen

Motor imagery electroencephalography (MI-EEG) decoding offers a non-invasive route for post-stroke rehabilitation, but cross-patient use remains difficult because pathological neural reorganization changes task-related EEG dynamics,…

Machine Learning · Computer Science 2026-05-12 Xiangkai Wang , Yun Zhao , Dongyi He , Qingling Xia , Gen Li , Xinlai Xing , Yuchi Pan , Bin Jiang

Multi-modal neuroimaging analysis is crucial for a comprehensive understanding of brain function and pathology, as it allows for the integration of different imaging techniques, thus overcoming the limitations of individual modalities.…

Computer Vision and Pattern Recognition · Computer Science 2025-03-27 Weiheng Yao , Zhihan Lyu , Mufti Mahmud , Ning Zhong , Baiying Lei , Shuqiang Wang

The significant inter-subject variability in electroen-cephalogram (EEG) signals often results in substantial changes to neural network weights as data distributions shift. This variability frequently causes catastrophic forgetting in…

Signal Processing · Electrical Eng. & Systems 2025-03-26 Dan Li , Hye-Bin Shin , Kang Yin , Seong-Whan Lee

Recent advancements in general-purpose or domain-specific multimodal large language models (LLMs) have witnessed remarkable progress for medical decision-making. However, they are designated for specific classification or generative tasks,…

Computer Vision and Pattern Recognition · Computer Science 2024-09-04 Songtao Jiang , Tuo Zheng , Yan Zhang , Yeying Jin , Li Yuan , Zuozhu Liu

Multi-modality image fusion aims at fusing modality-specific (complementarity) and modality-shared (correlation) information from multiple source images. To tackle the problem of the neglect of inter-feature relationships, high-frequency…

Computer Vision and Pattern Recognition · Computer Science 2025-05-20 Xiaoli Zhang , Liying Wang , Libo Zhao , Xiongfei Li , Siwei Ma