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Predicting molecular properties (e.g., atomization energy) is an essential issue in quantum chemistry, which could speed up much research progress, such as drug designing and substance discovery. Traditional studies based on density…

Computational Physics · Physics 2019-08-20 Chengqiang Lu , Qi Liu , Chao Wang , Zhenya Huang , Peize Lin , Lixin He

Machine learning (ML) offers considerable promise for the design of new molecules and materials. In real-world applications, the design problem is often domain-specific, and suffers from insufficient data, particularly labeled data, for ML…

Chemical Physics · Physics 2025-02-04 Ming Han , Ge Sun , Juan J. de Pablo

The integration of molecular and natural language representations has emerged as a focal point in molecular science, with recent advancements in Language Models (LMs) demonstrating significant potential for comprehensive modeling of both…

Biomolecules · Quantitative Biology 2025-03-19 Qizhi Pei , Rui Yan , Kaiyuan Gao , Jinhua Zhu , Lijun Wu

While large language models (LLMs) excel at static scientific reasoning, they struggle to model the temporal structure of dynamic physical processes. We present EvoMD-LLM (Evolutionary Molecular Dynamics Large Language Model), a framework…

Artificial Intelligence · Computer Science 2026-05-29 Zhichen Tang , Zhengzheng Dang , Yulin Chen , Jixin Wu , Haiwen Li , Yanming Wang

The explosion of visual content available online underscores the requirement for an accurate machine assessor to robustly evaluate scores across diverse types of visual contents. While recent studies have demonstrated the exceptional…

Computer Vision and Pattern Recognition · Computer Science 2023-12-29 Haoning Wu , Zicheng Zhang , Weixia Zhang , Chaofeng Chen , Liang Liao , Chunyi Li , Yixuan Gao , Annan Wang , Erli Zhang , Wenxiu Sun , Qiong Yan , Xiongkuo Min , Guangtao Zhai , Weisi Lin

Commonly-used transformer language models depend on a tokenization schema which sets an unchangeable subword vocabulary prior to pre-training, destined to be applied to all downstream tasks regardless of domain shift, novel word formations,…

Computation and Language · Computer Science 2021-08-03 Yuval Pinter , Amanda Stent , Mark Dredze , Jacob Eisenstein

Deploying Vision-Language Models (VLMs) on edge devices (e.g., smartphones and robots) is crucial for enabling low-latency and privacy-preserving intelligent applications. Given the resource constraints of these devices, quantization offers…

Computer Vision and Pattern Recognition · Computer Science 2025-11-13 Tianyu Guo , Shanwei Zhao , Shiai Zhu , Chenguang Ma

We introduce G2T-LLM, a novel approach for molecule generation that uses graph-to-tree text encoding to transform graph-based molecular structures into a hierarchical text format optimized for large language models (LLMs). This encoding…

Machine Learning · Computer Science 2024-10-04 Zhaoning Yu , Xiangyang Xu , Hongyang Gao

Vision-language models (VLMs) have transformed multimodal reasoning, but feeding hundreds of visual patch tokens into LLMs incurs quadratic computational costs, straining memory and context windows. Traditional approaches face a trade-off:…

Computer Vision and Pattern Recognition · Computer Science 2025-12-10 Jusheng Zhang , Xiaoyang Guo , Kaitong Cai , Qinhan Lv , Yijia Fan , Wenhao Chai , Jian Wang , Keze Wang

Recently, the remarkable advance of the Large Language Model (LLM) has inspired researchers to transfer its extraordinary reasoning capability to both vision and language data. However, the prevailing approaches primarily regard the visual…

Computer Vision and Pattern Recognition · Computer Science 2024-03-25 Yang Jin , Kun Xu , Kun Xu , Liwei Chen , Chao Liao , Jianchao Tan , Quzhe Huang , Bin Chen , Chenyi Lei , An Liu , Chengru Song , Xiaoqiang Lei , Di Zhang , Wenwu Ou , Kun Gai , Yadong Mu

Foundation models in language and vision benefit from a unified discrete token interface that converts raw inputs into sequences for scalable pre-training and inference. For graphs, an effective tokenizer should yield reusable discrete…

Information Retrieval · Computer Science 2026-05-28 Yang Xiang , Li Fan , Chenke Yin , Lutz Oettershagen , Chengtao Ji

Existing video coding for machines is often trained for a specific downstream task and model. As a result, the compressed representation becomes tightly coupled to the end task, making it difficult to scale across multiple tasks or adapt to…

Computer Vision and Pattern Recognition · Computer Science 2026-05-01 Wei Jiang , Wei Wang

Vision-Language Models (VLMs) are powerful tools for processing and understanding text and images. We study the processing of visual tokens in the language model component of LLaVA, a prominent VLM. Our approach focuses on analyzing the…

Computer Vision and Pattern Recognition · Computer Science 2025-04-29 Clement Neo , Luke Ong , Philip Torr , Mor Geva , David Krueger , Fazl Barez

Learning from data has led to paradigm shifts in a multitude of disciplines, including web, text, and image search, speech recognition, as well as bioinformatics. Can machine learning enable similar breakthroughs in understanding quantum…

Human expertise in chemistry and biomedicine relies on contextual molecular understanding, a capability that large language models (LLMs) can extend through fine-grained alignment between molecular structures and text. Recent multimodal…

Computation and Language · Computer Science 2025-03-10 Sumin Ha , Jun Hyeong Kim , Yinhua Piao , Sun Kim

Nuclear magnetic resonance (NMR) spectroscopy provides an experimental readout of local chemical environments, but its use in molecular representation learning has been constrained by heterogeneous data and incomplete atom-level…

Chemical Physics · Physics 2026-05-12 Jiebin Fang , Zidi Yan , Churu Mao , Yongjun Jiang , Xinyi Tang , Lei Miao , Dan Lu , Yun Huang , Wanjing Ding , Zhongjun Ma

Neural audio coding has emerged as a vivid research direction by promising good audio quality at very low bitrates unachievable by classical coding techniques. Here, end-to-end trainable autoencoder-like models represent the state of the…

Audio and Speech Processing · Electrical Eng. & Systems 2024-09-20 Andreas Brendel , Nicola Pia , Kishan Gupta , Lyonel Behringer , Guillaume Fuchs , Markus Multrus

Background: Virtual Screening (VS) has become an essential tool in drug discovery, enabling the rapid and cost-effective identification of potential bioactive molecules. Among recent advancements, Graph Neural Networks (GNNs) have gained…

Quantitative Methods · Quantitative Biology 2025-10-27 Salvatore Contino , Paolo Sortino , Maria Rita Gulotta , Ugo Perricone , Roberto Pirrone

Recently, multimodal large language models (MLLMs) have emerged as a key approach in achieving artificial general intelligence. In particular, vision-language MLLMs have been developed to generate not only text but also visual outputs from…

Computer Vision and Pattern Recognition · Computer Science 2026-05-20 Donghwan Chi , Hyomin Kim , Yoonjin Oh , Yongjin Kim , Donghoon Lee , Daejin Jo , Jongmin Kim , Junyeob Baek , Sungjin Ahn , Sungwoong Kim

Quantitative analysis of microstructural features on the nanoscale, including precipitates, local chemical orderings (LCOs) or structural defects (e.g. stacking faults) plays a pivotal role in understanding the mechanical and physical…

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