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Related papers: StateXDiff: Cell State-Contextualized Multimodal D…

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We present a dynamic model in which the weights are conditioned on an input sample x and are learned to match those that would be obtained by finetuning a base model on x and its label y. This mapping between an input sample and network…

Machine Learning · Computer Science 2023-06-12 Shahar Lutati , Lior Wolf

Predicting the effects of chemical and genetic perturbations on quantitative cell states is a central challenge in computational biology, molecular medicine and drug discovery. Recent work has leveraged large-scale single-cell data and…

Machine Learning · Computer Science 2026-03-16 Michael Scholkemper , Sach Mukherjee

Predicting human gaze scanpaths is crucial for understanding visual attention, with applications in human-computer interaction, autonomous systems, and cognitive robotics. While deep learning models have advanced scanpath prediction, most…

Computer Vision and Pattern Recognition · Computer Science 2025-08-01 Giuseppe Cartella , Vittorio Cuculo , Alessandro D'Amelio , Marcella Cornia , Giuseppe Boccignone , Rita Cucchiara

In this paper, we propose a novel framework for controllable video diffusion, OmniVDiff , aiming to synthesize and comprehend multiple video visual content in a single diffusion model. To achieve this, OmniVDiff treats all video visual…

Computer Vision and Pattern Recognition · Computer Science 2025-11-18 Dianbing Xi , Jiepeng Wang , Yuanzhi Liang , Xi Qiu , Yuchi Huo , Rui Wang , Chi Zhang , Xuelong Li

Cellular differentiation is governed by gene regulatory networks, the high-dimensional stochastic biochemical systems that determine the transcriptional landscape and mediate cellular responses to signals and perturbations. Although…

Molecular Networks · Quantitative Biology 2026-04-29 Suryanarayana Maddu , Victor Chardès , Michael J. Shelley

Diffusion-based tabular data synthesis models have yielded promising results. However, when the data dimensionality increases, existing models tend to degenerate and may perform even worse than simpler, non-diffusion-based models. This is…

Machine Learning · Computer Science 2025-11-12 Zuqing Li , Junhao Gan , Jianzhong Qi

Virtual try-off (VTOFF) aims to recover canonical flat-garment representations from images of dressed persons for standardized display and downstream virtual try-on. Prior methods often treat VTOFF as direct image translation driven by…

Computer Vision and Pattern Recognition · Computer Science 2026-03-11 Shuang Liu , Ao Yu , Linkang Cheng , Xiwen Huang , Li Zhao , Junhui Liu , Zhiting Lin , Yu Liu

Predicting patient features from single-cell data can help identify cellular states implicated in health and disease. Linear models and average cell type expressions are typically favored for this task for their efficiency and robustness,…

Machine Learning · Computer Science 2024-03-11 Jan P. Engelmann , Alessandro Palma , Jakub M. Tomczak , Fabian J. Theis , Francesco Paolo Casale

Understanding gene perturbation effects across diverse cellular contexts is a central challenge in functional genomics, with important implications for therapeutic discovery and precision medicine. Single-cell technologies enable…

Genomics · Quantitative Biology 2025-11-25 Abrar Rahman Abir , Sajib Acharjee Dip , Liqing Zhang

Radiotherapy treatment planning often relies on time-consuming, trial-and-error adjustments that heavily depend on the expertise of specialists, while existing deep learning methods face limitations in generalization, prediction accuracy,…

Computer Vision and Pattern Recognition · Computer Science 2026-01-06 Hui Xie , Haiqin Hu , Lijuan Ding , Qing Li , Yue Sun , Tao Tan

Novel view synthesis from a single image requires inferring occluded regions of objects and scenes whilst simultaneously maintaining semantic and physical consistency with the input. Existing approaches condition neural radiance fields…

Computer Vision and Pattern Recognition · Computer Science 2023-02-21 Jiatao Gu , Alex Trevithick , Kai-En Lin , Josh Susskind , Christian Theobalt , Lingjie Liu , Ravi Ramamoorthi

The advent of single-cell technology has significantly improved our understanding of cellular states and subpopulations in various tissues under normal and diseased conditions by employing data-driven approaches such as clustering and…

The paradigm shift toward structure-driven molecule generation has been propelled by advances in deep generative models, such as variational auto-encoders and diffusion models. However, these generative models for molecular design remain…

Machine Learning · Computer Science 2026-04-17 Peidong Liu , Wenbo Zhang , Wei Ju , Jiancheng Lv , Xianggen Liu

Acquiring aligned visuo-tactile datasets is slow and costly, requiring specialised hardware and large-scale data collection. Synthetic generation is promising, but prior methods are typically single-modality, limiting cross-modal learning.…

Computer Vision and Pattern Recognition · Computer Science 2026-02-24 Sirine Bhouri , Lan Wei , Jian-Qing Zheng , Dandan Zhang

In light of the remarkable success of in-context learning in large language models, its potential extension to the vision domain, particularly with visual foundation models like Stable Diffusion, has sparked considerable interest. Existing…

Computer Vision and Pattern Recognition · Computer Science 2023-12-05 Tianqi Chen , Yongfei Liu , Zhendong Wang , Jianbo Yuan , Quanzeng You , Hongxia Yang , Mingyuan Zhou

Accurately modeling the relationship between perturbations, transcriptional responses, and phenotypic changes is essential for building an AI Virtual Cell (AIVC). However, existing methods typically constrained to modeling direct…

Machine Learning · Computer Science 2025-11-25 Rui Peng , Ziru Liu , Lingyuan Ye , Yuxing Lu , Boxin Shi , Jinzhuo Wang

The Diffusion Probabilistic Model (DPM) has demonstrated remarkable performance across a variety of generative tasks. The inherent randomness in diffusion models helps address issues such as blurring at the edges of medical images and…

Image and Video Processing · Electrical Eng. & Systems 2025-07-25 Yilong Hu , Shijie Chang , Lihe Zhang , Feng Tian , Weibing Sun , Huchuan Lu

Predicting the effects of perturbations in-silico on cell state can identify drivers of cell behavior at scale and accelerate drug discovery. However, modeling challenges remain due to the inherent heterogeneity of single cell gene…

Brain network analysis has emerged as pivotal method for gaining a deeper understanding of brain functions and disease mechanisms. Despite the existence of various network construction approaches, shortcomings persist in the learning of…

Computer Vision and Pattern Recognition · Computer Science 2023-11-10 Yongcheng Zong , Shuqiang Wang

In-context learning allows large models to adapt to new tasks from a few demonstrations, but it has shown limited success in molecular design. Existing databases such as ChEMBL contain molecular properties spanning millions of biological…

Machine Learning · Computer Science 2025-10-13 Gang Liu , Jie Chen , Yihan Zhu , Michael Sun , Tengfei Luo , Nitesh V Chawla , Meng Jiang
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