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Particle-based shape modeling (PSM) is a popular approach to automatically quantify shape variability in populations of anatomies. The PSM family of methods employs optimization to automatically populate a dense set of corresponding…

Computer Vision and Pattern Recognition · Computer Science 2024-11-26 Hong Xu , Shireen Y. Elhabian

In this work, we survey recent studies on masked image modeling (MIM), an approach that emerged as a powerful self-supervised learning technique in computer vision. The MIM task involves masking some information, e.g. pixels, patches, or…

Computer Vision and Pattern Recognition · Computer Science 2025-07-11 Vlad Hondru , Florinel Alin Croitoru , Shervin Minaee , Radu Tudor Ionescu , Nicu Sebe

The construction industry represents a major sector in terms of resource consumption. Recycled construction material has high reuse potential, but quality monitoring of the aggregates is typically still performed with manual methods.…

Computer Vision and Pattern Recognition · Computer Science 2025-08-06 Yu Zhou , Pelle Thielmann , Ayush Chamoli , Bruno Mirbach , Didier Stricker , Jason Rambach

Evaluating LLMs and text-to-image models is a computationally intensive task often overlooked. Efficient evaluation is crucial for understanding the diverse capabilities of these models and enabling comparisons across a growing number of…

Artifacts pose a significant challenge in medical imaging, impacting diagnostic accuracy and downstream analysis. While image-based approaches for detecting artifacts can be effective, they often rely on preprocessing methods that can lead…

Image and Video Processing · Electrical Eng. & Systems 2025-08-08 Caner Özer , Patryk Rygiel , Bram de Wilde , İlkay Öksüz , Jelmer M. Wolterink

Deep learning has achieved remarkable success in image recognition, yet their inherent opacity poses challenges for deployment in critical domains. Concept-based interpretations aim to address this by explaining model reasoning through…

Computer Vision and Pattern Recognition · Computer Science 2026-01-21 Shizhan Gong , Xiaofan Zhang , Qi Dou

The remarkable growth and significant success of machine learning have expanded its applications into programming languages and program analysis. However, a key challenge in adopting the latest machine learning methods is the representation…

Programming Languages · Computer Science 2023-12-01 Ali TehraniJamsaz , Quazi Ishtiaque Mahmud , Le Chen , Nesreen K. Ahmed , Ali Jannesari

Deep learning models have become fundamental tools in drug design. In particular, large language models trained on biochemical sequences learn feature vectors that guide drug discovery through virtual screening. However, such models do not…

Biomolecules · Quantitative Biology 2025-03-28 Joseph D. Clark , Tanner J. Dean , Diwakar Shukla

During recent years, the renaissance of neural networks as the major machine learning paradigm and more specifically, the confirmation that deep learning techniques provide state-of-the-art results for most of computer vision tasks has been…

Image and Video Processing · Electrical Eng. & Systems 2021-05-06 Jesus Angulo

Although much of the success of Deep Learning builds on learning good representations, a rigorous method to evaluate their quality is lacking. In this paper, we treat the evaluation of representations as a model selection problem and…

Machine Learning · Computer Science 2024-11-19 Yazhe Li , Jorg Bornschein , Marcus Hutter

Image-text retrieval, as a fundamental and important branch of information retrieval, has attracted extensive research attentions. The main challenge of this task is cross-modal semantic understanding and matching. Some recent works focus…

Computer Vision and Pattern Recognition · Computer Science 2023-04-24 Weijing Chen , Linli Yao , Qin Jin

Objective: Modelling the associations from high-throughput experimental molecular data has provided unprecedented insights into biological pathways and signalling mechanisms. Graphical models and networks have especially proven to be useful…

Machine Learning · Statistics 2013-04-24 Marco Scutari , Radhakrishnan Nagarajan

Endoscopy is the most widely used medical technique for cancer and polyp detection inside hollow organs. However, images acquired by an endoscope are frequently affected by illumination artefacts due to the enlightenment source orientation.…

Image and Video Processing · Electrical Eng. & Systems 2022-07-07 Axel Garcia-Vega , Ricardo Espinosa , Gilberto Ochoa-Ruiz , Thomas Bazin , Luis Eduardo Falcon-Morales , Dominique Lamarque , Christian Daul

Deep learning-based medical image-to-mesh reconstruction has rapidly evolved, enabling the transformation of medical imaging data into three-dimensional mesh models that are critical in computational medicine and in silico trials for…

Computer Vision and Pattern Recognition · Computer Science 2025-05-07 Fengming Lin , Arezoo Zakeri , Yidan Xue , Michael MacRaild , Haoran Dou , Zherui Zhou , Ziwei Zou , Ali Sarrami-Foroushani , Jinming Duan , Alejandro F. Frangi

Motivation: Cryo-Electron Tomography (cryo-ET) is a 3D bioimaging tool that visualizes the structural and spatial organization of macromolecules at a near-native state in single cells, which has broad applications in life science. However,…

Quantitative Methods · Quantitative Biology 2021-07-28 Xuefeng Du , Haohan Wang , Zhenxi Zhu , Xiangrui Zeng , Yi-Wei Chang , Jing Zhang , Min Xu

Current benchmarks for assessing vision-language models (VLMs) often focus on their perception or problem-solving capabilities and neglect other critical aspects such as fairness, multilinguality, or toxicity. Furthermore, they differ in…

Computer Vision and Pattern Recognition · Computer Science 2024-10-25 Tony Lee , Haoqin Tu , Chi Heem Wong , Wenhao Zheng , Yiyang Zhou , Yifan Mai , Josselin Somerville Roberts , Michihiro Yasunaga , Huaxiu Yao , Cihang Xie , Percy Liang

By their very nature microscopy images of cells and tissues consist of a limited number of object types or components. In contrast to most natural scenes, the composition is known a priori. Decomposing biological images into semantically…

Computer Vision and Pattern Recognition · Computer Science 2019-09-04 Avelino Javer , Jens Rittscher

One of the primary challenges faced by deep learning is the degree to which current methods exploit superficial statistics and dataset bias, rather than learning to generalise over the specific representations they have experienced. This is…

Computer Vision and Pattern Recognition · Computer Science 2019-07-30 Damien Teney , Peng Wang , Jiewei Cao , Lingqiao Liu , Chunhua Shen , Anton van den Hengel

The powerful representation capacity of deep learning has made it inevitable for the underwater image enhancement community to employ its potential. The exploration of deep underwater image enhancement networks is increasing over time, and…

Computer Vision and Pattern Recognition · Computer Science 2019-07-19 Saeed Anwar , Chongyi Li

The stunning qualitative improvement of recent text-to-image models has led to their widespread attention and adoption. However, we lack a comprehensive quantitative understanding of their capabilities and risks. To fill this gap, we…

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