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During development, highly ordered structures emerge as cells collectively coordinate with each other. While recent advances have clarified how individual cells process and respond to external signals, understanding collective cellular…

Biological Physics · Physics 2026-02-05 Ashutosh Tripathi , Jörn Dunkel , Dominic J. Skinner

Self-organizing complex systems typically are comprised of a large number of frequently similar components or events. Through their process, a pattern at the global-level of a system emerges solely from numerous interactions among the…

Artificial Intelligence · Computer Science 2007-05-23 Vitorino Ramos , Ajith Abraham

Infants, adults, non-human primates and non-primates all learn patterns implicitly, and they do so across modalities. The biological evidence supports the hypothesis that the mechanism for this learning is general but computationally local.…

Neurons and Cognition · Quantitative Biology 2021-08-16 John Rohrlich , Randall C. O'Reilly

Growth and shape formation in crowded multicellular assemblies arise from the interplay of chemical gradients, single-cell expansion and mechanical interactions, making it essential to understand how these processes jointly shape collective…

Soft Condensed Matter · Physics 2025-12-02 Ilias-Marios Sarris , Ramin Golestianian , Philip Bittihn

In order to keep trace of information and grow up, the infant brain has to resolve the problem about where old information is located and how to index new ones. We propose that the immature prefrontal cortex (PFC) use its primary…

Neural and Evolutionary Computing · Computer Science 2022-01-03 Alexandre Pitti , Mathias Quoy , Catherine Lavandier , Sofiane Boucenna , Wassim Swaileh , Claudio Weidmann

The spectacular results achieved in machine learning, including the recent advances in generative AI, rely on large data collections. On the opposite, intelligent processes in nature arises without the need for such collections, but simply…

Machine Learning · Computer Science 2024-02-12 Alessandro Betti , Marco Gori

Is it possible to link a set of nodes without using preexisting positional information or any kind of long-range attraction of the nodes? Can the process of generating positional information, i.e. the detection of ``unknown'' nodes and the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Frank Schweitzer

In nature self-organized systems as flock of birds, school of fishes or herd of sheeps have to deal with the presence of external agents such as predators or leaders which modify their internal dynamic. Such situations take into account a…

Biological Physics · Physics 2012-10-15 Giacomo Albi , Lorenzo Pareschi

The development of multicellular organisms proceeds through a series of morphogenetic and cell-state transitions, transforming homogeneous zygotes into complex adults by a process of self-organization. Many of these transitions are achieved…

Tissues and Organs · Quantitative Biology 2020-07-08 Jake Cornwall Scoones , Deb Sankar Banerjee , Shiladitya Banerjee

Hierarchy is one of the most conspicuous features of numerous natural, technological and social systems. The underlying structures are typically complex and their most relevant organizational principle is the ordering of the ties among the…

Physics and Society · Physics 2014-03-05 Tamás Nepusz , Tamás Vicsek

We study the predictability of large events in self-organizing systems. We focus on a set of models which have been studied as analogs of earthquake faults and fault systems, and apply methods based on techniques which are of current…

Condensed Matter · Physics 2009-10-22 S. L. Pepke , J. M. Carlson

Biological systems perform complex multi-step processes in a reproducible way despite underlying stochasticity. The standard explanation is micromanagement by molecular machinery that recognizes and corrects specific errors. Here we study…

Populations and Evolution · Quantitative Biology 2026-05-14 Riccardo Ravasio , Kabir Husain , Constantine G. Evans , Rob Phillips , Marco Ribezzi-Crivellari , Jack W. Szostak , Arvind Murugan

The improbability of a spontaneously generated self-assembling molecule has suggested that life began with a set of simpler, collectively replicating elements, such as an enclosed autocatalytic set of polymers (or protocell). Since…

Adaptation and Self-Organizing Systems · Physics 2013-08-26 Liane Gabora

The conceptual landscape of convection has two simple gateways: optimal function and random form. Optimal convection adjusts toward a univariate ideal called neutrality. Convection form involves elements (parcels, bubbles, drafts) whose…

Adaptation and Self-Organizing Systems · Physics 2025-04-02 Brian E. Mapes

Self-organization is frequently observed in active collectives, from ant rafts to molecular motor assemblies. General principles describing self-organization away from equilibrium have been challenging to identify. We offer a unifying…

A wide range of applications require learning image generation models whose latent space effectively captures the high-level factors of variation present in the data distribution. The extent to which a model represents such variations…

Computer Vision and Pattern Recognition · Computer Science 2021-11-09 Avinandan Bose , Aniket Das , Yatin Dandi , Piyush Rai

We consider self-organization and memory formation in a mesoscopic model of an amorphous solid subject to a random shear strain protocol confined to a strain range $\pm \varepsilon_{\rm max}$. We develop proper read-out protocols to show…

Soft Condensed Matter · Physics 2025-06-03 Muhittin Mungan , Dheeraj Kumar , Sylvain Patinet , Damien Vandembroucq

The growth rate of organisms depends both on external conditions and on internal states, such as the expression levels of various genes. We show that to achieve a criterion mean growth rate over an ensemble of conditions, the internal…

Populations and Evolution · Quantitative Biology 2007-12-31 Samuel F. Taylor , Naftali Tishby , William Bialek

Biological and living systems process information across spatiotemporal scales, exhibiting the hallmark ability to constantly modulate their behavior to ever-changing and complex environments. In the presence of repeated stimuli, a…

Statistical Mechanics · Physics 2025-02-04 Giorgio Nicoletti , Matteo Bruzzone , Samir Suweis , Marco Dal Maschio , Daniel Maria Busiello

The task of learning patterns is typically associated with systems that update parameters on fixed architectures, such as neural networks, where learning proceeds through continuous optimization. Here, we demonstrate that pattern learning…

Disordered Systems and Neural Networks · Physics 2026-04-29 Shabeeb Ameen , Tao Zhang , J. M. Schwarz