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Microscopic images from multiple modalities can produce plentiful experimental information. In practice, biological or physical constraints under a given observation period may prevent researchers from acquiring enough microscopic scanning.…

Image and Video Processing · Electrical Eng. & Systems 2021-03-30 Jun Zhuang , Dali Wang

While the importance of automatic image analysis is continuously increasing, recent meta-research revealed major flaws with respect to algorithm validation. Performance metrics are particularly key for meaningful, objective, and transparent…

Image and Video Processing · Electrical Eng. & Systems 2023-12-08 Annika Reinke , Minu D. Tizabi , Carole H. Sudre , Matthias Eisenmann , Tim Rädsch , Michael Baumgartner , Laura Acion , Michela Antonelli , Tal Arbel , Spyridon Bakas , Peter Bankhead , Arriel Benis , Matthew Blaschko , Florian Buettner , M. Jorge Cardoso , Jianxu Chen , Veronika Cheplygina , Evangelia Christodoulou , Beth Cimini , Gary S. Collins , Sandy Engelhardt , Keyvan Farahani , Luciana Ferrer , Adrian Galdran , Bram van Ginneken , Ben Glocker , Patrick Godau , Robert Haase , Fred Hamprecht , Daniel A. Hashimoto , Doreen Heckmann-Nötzel , Peter Hirsch , Michael M. Hoffman , Merel Huisman , Fabian Isensee , Pierre Jannin , Charles E. Kahn , Dagmar Kainmueller , Bernhard Kainz , Alexandros Karargyris , Alan Karthikesalingam , A. Emre Kavur , Hannes Kenngott , Jens Kleesiek , Andreas Kleppe , Sven Kohler , Florian Kofler , Annette Kopp-Schneider , Thijs Kooi , Michal Kozubek , Anna Kreshuk , Tahsin Kurc , Bennett A. Landman , Geert Litjens , Amin Madani , Klaus Maier-Hein , Anne L. Martel , Peter Mattson , Erik Meijering , Bjoern Menze , David Moher , Karel G. M. Moons , Henning Müller , Brennan Nichyporuk , Felix Nickel , M. Alican Noyan , Jens Petersen , Gorkem Polat , Susanne M. Rafelski , Nasir Rajpoot , Mauricio Reyes , Nicola Rieke , Michael Riegler , Hassan Rivaz , Julio Saez-Rodriguez , Clara I. Sánchez , Julien Schroeter , Anindo Saha , M. Alper Selver , Lalith Sharan , Shravya Shetty , Maarten van Smeden , Bram Stieltjes , Ronald M. Summers , Abdel A. Taha , Aleksei Tiulpin , Sotirios A. Tsaftaris , Ben Van Calster , Gaël Varoquaux , Manuel Wiesenfarth , Ziv R. Yaniv , Paul Jäger , Lena Maier-Hein

X-ray Ptychography is an advanced computational microscopy technique which is delivering exceptionally detailed quantitative imaging of biological and nanotechnology specimens. However coarse parametrisation in propagation distance,…

Image and Video Processing · Electrical Eng. & Systems 2021-10-20 Francesco Guzzi , George Kourousias , Fulvio Billè , Roberto Pugliese , Alessandra Gianoncelli , Sergio Carrato

This work demonstrates a multi-lens microscopic imaging system that overlaps multiple independent fields of view on a single sensor for high-efficiency automated specimen analysis. Automatic detection, classification and counting of various…

Computer Vision and Pattern Recognition · Computer Science 2022-01-19 Xing Yao , Vinayak Pathak , Haoran Xi , Amey Chaware , Colin Cooke , Kanghyun Kim , Shiqi Xu , Yuting Li , Timothy Dunn , Pavan Chandra Konda , Kevin C. Zhou , Roarke Horstmeyer

The rapid advancement of foundation models in medical imaging represents a significant leap toward enhancing diagnostic accuracy and personalized treatment. However, the deployment of foundation models in healthcare necessitates a rigorous…

Computer Vision and Pattern Recognition · Computer Science 2024-10-08 Congzhen Shi , Ryan Rezai , Jiaxi Yang , Qi Dou , Xiaoxiao Li

We present an algorithm for creating high resolution anatomically plausible images consistent with acquired clinical brain MRI scans with large inter-slice spacing. Although large data sets of clinical images contain a wealth of…

Computer Vision and Pattern Recognition · Computer Science 2019-03-14 Adrian V. Dalca , Katherine L. Bouman , William T. Freeman , Natalia S. Rost , Mert R. Sabuncu , Polina Golland

The amount of image datasets collected for environmental monitoring purposes has increased in the past years as computer vision assisted methods have gained interest. Computer vision applications rely on high-quality datasets, making data…

Computer Vision and Pattern Recognition · Computer Science 2024-12-23 Mikko Impiö , Philipp M. Rehsen , Jenni Raitoharju

Object counting and localization are key steps for quantitative analysis in large-scale microscopy applications. This procedure becomes challenging when target objects are overlapping, are densely clustered, and/or present fuzzy boundaries.…

Computer Vision and Pattern Recognition · Computer Science 2022-03-30 Shijie Li , Thomas Ach , Guido Gerig

This work proposes a multi-image matching method to estimate semantic correspondences across multiple images. In contrast to the previous methods that optimize all pairwise correspondences, the proposed method identifies and matches only a…

Computer Vision and Pattern Recognition · Computer Science 2018-05-02 Qianqian Wang , Xiaowei Zhou , Kostas Daniilidis

Recent advances in microscopy have enabled the rapid generation of terabytes of image data in cell biology and biomedical research. Vision-language models (VLMs) offer a promising solution for large-scale biological image analysis,…

Computer Vision and Pattern Recognition · Computer Science 2024-07-03 Alejandro Lozano , Jeffrey Nirschl , James Burgess , Sanket Rajan Gupte , Yuhui Zhang , Alyssa Unell , Serena Yeung-Levy

Recent advancements in artificial intelligence (AI), particularly foundation models (FMs), have revolutionized medical image analysis, demonstrating strong zero- and few-shot performance across diverse medical imaging tasks, from…

Computer Vision and Pattern Recognition · Computer Science 2025-10-21 Praveenbalaji Rajendran , Mojtaba Safari , Wenfeng He , Mingzhe Hu , Shansong Wang , Jun Zhou , Xiaofeng Yang

We propose a real-time image matching framework, which is hybrid in the sense that it uses both hand-crafted features and deep features obtained from a well-tuned deep convolutional network. The matching problem, which we concentrate on, is…

Computer Vision and Pattern Recognition · Computer Science 2020-06-11 Alper Kaplan , Erdem Akagunduz

We propose a method to match anatomical locations between pairs of medical images in longitudinal comparisons. The matching is made possible by computing a descriptor of the query point in a source image based on a hierarchical sparse…

Image and Video Processing · Electrical Eng. & Systems 2023-09-26 Halid Ziya Yerebakan , Yoshihisa Shinagawa , Mahesh Ranganath , Simon Allen-Raffl , Gerardo Hermosillo Valadez

Fingerprint mosaicking, which is the process of combining multiple fingerprint images into a single master fingerprint, is an essential process in modern biometric systems. However, it is prone to errors that can significantly degrade…

Computer Vision and Pattern Recognition · Computer Science 2025-01-10 Laurenz Ruzicka , Alexander Spenke , Stephan Bergmann , Gerd Nolden , Bernhard Kohn , Clemens Heitzinger

Representation learning has driven major advances in natural image analysis by enabling models to acquire high-level semantic features. In microscopy imaging, however, it remains unclear what current representation learning methods actually…

Computer Vision and Pattern Recognition · Computer Science 2026-03-17 Ivan Svatko , Maxime Sanchez , Ihab Bendidi , Gilles Cottrell , Auguste Genovesio

In recent years, many mammographic image analysis methods have been introduced for improving cancer classification tasks. Two major issues of mammogram classification tasks are leveraging multi-view mammographic information and…

Computer Vision and Pattern Recognition · Computer Science 2023-09-08 Thanh-Huy Nguyen , Quang Hien Kha , Thai Ngoc Toan Truong , Ba Thinh Lam , Ba Hung Ngo , Quang Vinh Dinh , Nguyen Quoc Khanh Le

Histopathology images; microscopy images of stained tissue biopsies contain fundamental prognostic information that forms the foundation of pathological analysis and diagnostic medicine. However, diagnostics from histopathology images…

Computer Vision and Pattern Recognition · Computer Science 2019-10-30 Aïcha BenTaieb , Ghassan Hamarneh

In the modern world, technology is at its peak. Different avenues in programming and technology have been explored for data analysis, automation, and robotics. Machine learning is key to optimize data analysis, make accurate predictions,…

Subcellular Processes · Quantitative Biology 2023-10-18 Akshay Bhalla , Suraj Rajendran

1) Biological collections house millions of specimens with digital images increasingly available through open-access platforms. However, most imaging protocols were developed for human interpretation without considering automated analysis…

Traditional snapshot hyperspectral imaging systems generally require multiple refractive-optics-based elements to modulate light, resulting in bulky framework. In pursuit of a more compact form factor, a metasurface-based snapshot…

Optics · Physics 2022-11-29 Qiangbo Zhang , Zeqing Yu , Xinyu Liu , Chang Wang , Zhenrong Zheng
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