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In many fields, researchers are interested in large and complex biological processes. Two important examples are gene expression and DNA methylation in genetics. One key problem is to identify aberrant patterns of these processes and…

Applications · Statistics 2012-10-03 Matthias Kormaksson , James G. Booth , Maria E. Figueroa , Ari Melnick

Time series clustering poses a significant challenge with diverse applications across domains. A prominent drawback of existing solutions lies in their limited interpretability, often confined to presenting users with centroids. In…

Machine Learning · Computer Science 2025-02-19 Paul Boniol , Donato Tiano , Angela Bonifati , Themis Palpanas

The K-Modes algorithm, developed for clustering categorical data, is of high algorithmic simplicity but suffers from unreliable performances in clustering quality and clustering efficiency, both heavily influenced by the choice of initial…

Machine Learning · Computer Science 2025-02-18 Bipana Thapaliya , Yu Zhuang

Microarrays are made it possible to simultaneously monitor the expression profiles of thousands of genes under various experimental conditions. Identification of co-expressed genes and coherent patterns is the central goal in microarray or…

Computational Engineering, Finance, and Science · Computer Science 2012-01-25 T. Chandrasekhar , K. Thangavel , E. Elayaraja

The size and structure of spatial molecular and atomic clustering can significantly impact material properties and is therefore important to accurately quantify. Ripley's K-function (K(r)), a measure of spatial correlation, can be used to…

Materials Science · Physics 2020-11-26 Galen B. Vincent , Andrew P. Proudian , Jeramy D. Zimmerman

We address general-shaped clustering problems under very weak parametric assumptions with a two-step hybrid robust clustering algorithm based on trimmed k-means and hierarchical agglomeration. The algorithm has low computational complexity…

Methodology · Statistics 2022-01-19 Luca Insolia , Domenico Perrotta

Recent advances in image clustering typically focus on learning better deep representations. In contrast, we present an orthogonal approach that does not rely on abstract features but instead learns to predict image transformations and…

Computer Vision and Pattern Recognition · Computer Science 2020-10-29 Tom Monnier , Thibault Groueix , Mathieu Aubry

Decision-making in complex systems often relies on machine learning models, yet highly accurate models such as XGBoost and neural networks can obscure the reasoning behind their predictions. In operations research applications,…

Machine Learning · Computer Science 2025-02-28 Gaurav Arwade , Sigurdur Olafsson

Interpretable machine learning has emerged as central in leveraging artificial intelligence within high-stakes domains such as healthcare, where understanding the rationale behind model predictions is as critical as achieving high…

Machine Learning · Computer Science 2024-04-30 Christel Sirocchi , Martin Urschler , Bastian Pfeifer

Clustering functional data is a challenging task due to intrinsic infinite-dimensionality and the need for stable, data-adaptive partitioning. In this work, we propose a clustering framework based on Random Projections, which simultaneously…

Methodology · Statistics 2025-12-18 Matteo Mori , Laura Anderlucci

This paper introduces a novel mixture model-based approach for simultaneous clustering and optimal segmentation of functional data which are curves presenting regime changes. The proposed model consists in a finite mixture of piecewise…

Methodology · Statistics 2014-05-02 Faicel Chamroukhi

Clustering analysis has been widely used in trust evaluation on various complex networks such as wireless sensors networks and online social networks. Spectral clustering is one of the most commonly used algorithms for graph-structured data…

Social and Information Networks · Computer Science 2021-12-03 Gang Mei , Jingzhi Tu , Lei Xiao , Francesco Piccialli

Categorical sequence clustering plays a crucial role in various fields, but the lack of interpretability in cluster assignments poses significant challenges. Sequences inherently lack explicit features, and existing sequence clustering…

Machine Learning · Computer Science 2023-09-06 Junjie Dong , Xinyi Yang , Mudi Jiang , Lianyu Hu , Zengyou He

Principal Component Analysis (PCA) and K-means constitute fundamental techniques in multivariate analysis. Although they are frequently applied independently or sequentially to cluster observations, the relationship between them, especially…

Machine Learning · Statistics 2025-12-02 Victor Saquicela , Kenneth Palacio-Baus , Mario Chifla

The K-means algorithm is arguably the most popular data clustering method, commonly applied to processed datasets in some "feature spaces", as is in spectral clustering. Highly sensitive to initializations, however, K-means encounters a…

Machine Learning · Computer Science 2019-06-04 Feiyu Chen , Yuchen Yang , Liwei Xu , Taiping Zhang , Yin Zhang

Nowadays processing of Big Security Data, such as log messages, is commonly used for intrusion detection purposed. Its heterogeneous nature, as well as combination of numerical and categorical attributes does not allow to apply the existing…

Machine Learning · Computer Science 2019-10-01 Andrey Sapegin , Christoph Meinel

The shapes of Stokes profiles contain much information about the atmospheric conditions that produced them. However, a variety of different atmospheric structures can produce very similar profiles. Thus, it is important for proper…

Solar and Stellar Astrophysics · Physics 2023-07-12 Thore Espedal Moe , Tiago M. D. Pereira , Flavio Calvo , Jorrit Leenaarts

Learning medical visual representations directly from paired images and reports through multimodal self-supervised learning has emerged as a novel and efficient approach to digital diagnosis in recent years. However, existing models suffer…

Computer Vision and Pattern Recognition · Computer Science 2025-06-16 Libin Lan , Hongxing Li , Zunhui Xia , Juan Zhou , Xiaofei Zhu , Yongmei Li , Yudong Zhang , Xin Luo

Kernel $k$-means clustering can correctly identify and extract a far more varied collection of cluster structures than the linear $k$-means clustering algorithm. However, kernel $k$-means clustering is computationally expensive when the…

Machine Learning · Computer Science 2019-02-12 Shusen Wang , Alex Gittens , Michael W. Mahoney

This paper extends the class of ordinal regression models with a structured interpretation of the problem by applying a novel treatment of encoded labels. The net effect of this is to transform the underlying problem from an ordinal…

Machine Learning · Computer Science 2019-06-03 Niall Twomey , Rafael Poyiadzi , Callum Mann , Raúl Santos-Rodríguez