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Globular proteins undergo thermal fluctuations in solution, while maintaining an overall well-defined folded structure. In particular, studies have shown that the core structure of globular proteins differs in small, but significant ways…

N6-methyladenosine (m6A) is a prevalent RNA post-transcriptional modification that plays crucial roles in RNA stability, structural dynamics, and interactions with proteins. The YT521-B (YTH) family of proteins, which are notable m6A…

Biomolecules · Quantitative Biology 2024-09-10 Valerio Piomponi , Miroslav Krepl , Jiri Sponer , Giovanni Bussi

The effect of mutations on protein structures is usually rather localized and minor. Finding a mutation that can single-handedly change the fold and/or topology of a protein structure is a rare exception. The A31P mutant of the homodimeric…

Biomolecules · Quantitative Biology 2024-09-09 Olympia-Dialekti Vouzina , Alexandros Tafanidis , Nicholas M. Glykos

We present $^{77}$Se-NMR measurements on single-crystalline FeSe under pressures up to 2 GPa. Based on the observation of the splitting and broadening of the NMR spectrum due to structural twin domains, we discovered that static, local…

Strongly Correlated Electrons · Physics 2017-12-13 P. Wiecki , M. Nandi , A. E. Böhmer , S. L. Bud'ko , P. C. Canfield , Y. Furukawa

A magnetic order can be completely suppressed at zero temperature($T$), by doping carriers or applying pressure, at a quantum critical point(QCP), around which physical properties change drastically. However, the situation is unclear for an…

Superconductivity · Physics 2018-10-23 C. G. Wang , Z. Li , J. Yang , L. Y. Xing , G. Y. Dai , X. C. Wang , C. Q. Jin , R. Zhou , Guo-qing Zheng

We investigate how the observable relaxation behavior of an isolated quantum many-body system is modified in response to weak-to-moderate perturbations within a nonperturbative typicality framework. A key role is played by the so-called…

Statistical Mechanics · Physics 2020-08-11 Lennart Dabelow , Patrick Vorndamme , Peter Reimann

Magnetic nanotubes have garnered immense attention for their potential in high-density magnetic memory, owing to their stable flux closure configuration and fast, reproducible reversal processes. However, characterizing their magnetic…

Mesoscale and Nanoscale Physics · Physics 2024-08-20 Abhishek Kumar , Chirag Kalouni , Raghvendra Posti , Vivek K Malik , Dhananjay Tiwari , Debangsu Roy

The nuclear magnetic resonance (NMR) relaxation of quadrupolar nuclei is governed by the electric field gradient (EFG) fluctuations at their position. In classical molecular dynamics (MD), the electron cloud contribution to the EFG can be…

Chemical Physics · Physics 2021-09-29 Iurii Chubak , Laura Scalfi , Antoine Carof , Benjamin Rotenberg

Familial hemiplegic migraine (FHM) is a rare subtype of migraine with aura. A mutation causing FHM type 3 (FHM3) has been identified in SCN1A encoding the Nav1.1 Na$^+$ channel. This genetic defect affects the inactivation gate. While the…

Neurons and Cognition · Quantitative Biology 2014-08-13 Markus A. Dahlem , Julia Schumacher , Niklas Hübel

We present a verified computational model of the SH3 domain transition state (TS) ensemble. This model was built for three separate SH3 domains using experimental s in all-atom protein folding simulations. While averaging over all…

Biomolecules · Quantitative Biology 2007-05-23 Isaac A. Hubner , Katherine A. Edmonds , Eugene I. Shakhnovich

Neutrinos can rapidly change flavor in the inner dense regions of core-collapse supernovae and neutron star mergers due to the neutrino fast flavor instability. If the amount of flavor transformation is significant, the FFI could…

High Energy Astrophysical Phenomena · Physics 2024-09-13 Sherwood Richers

NMR is the technique of election to probe the local properties of materials. Herein we present the results of density functional theory (DFT) \textit{ab initio} calculations of the NMR parameters for fluorapatite (FAp), a calcium…

Materials Science · Physics 2012-07-27 Barbara Pavan , Davide Ceresoli , Mary M. J. Tecklenburg , Marco Fornari

The properties of spin polarized neutron matter are studied both at zero and finite temperature using Skyrme-type interactions. It is shown that the critical density at which ferromagnetism takes place decreases with temperature. This…

Nuclear Theory · Physics 2009-11-11 Arnau Rios , Artur Polls , Isaac Vidaña

The fidelity and entropy in an easy-axis antiferromagnetic Heisenberg spin-1 chain are studied numerically. By using the method of density-matrix renormalization group, the effects of anisotropy on fidelity and entanglement entropy are…

Quantum Physics · Physics 2015-05-19 Jie Ren , Shiqun Zhu

Ferromagnetic resonance (FMR) was used to investigate the static and dynamic magnetic properties of carbon-doped Mn5Ge3 (C$_{0.1}$ and C$_{0.2}$) thin films grown on Ge(111). The temperature dependence of magnetic anisotropy shows an…

Materials Science · Physics 2016-03-02 C-E Dutoit , V. O. Dolocan , M. D. Kuz'min , L. Michez , M. Petit , V. Le Thanh , B. Pigeau , S. Bertaina

Entropy changes due to delocalization and decoherence effects should modify the predictions for the cosmological neutrino background (C$\nu$B) temperature when one treats neutrino flavors in the framework of composite quantum systems.…

Cosmology and Nongalactic Astrophysics · Physics 2013-09-30 Alex E. Bernardini

Friction in ordered atomistic layers plays a central role in various nanoscale systems ranging from nanomachines to biological systems. It governs transport properties, wear and dissipation. Defects and incommensurate lattice constants…

Soft Condensed Matter · Physics 2017-05-24 Jan Kiethe , Ramil Nigmatullin , Dimitri Kalincev , Thorben Schmirander , Tanja E. Mehlstaubler

When quantifying the mixing properties of a quantum dynamical system in terms of dynamical entropy, the following scheme appears natural: observe the state of the system at regular time intervals while it evolves and determine the entropy…

Mathematical Physics · Physics 2013-02-19 M. Fannes , B. Haegeman , D. Vanpeteghem

Proteins have evolved through mutations, amino acid substitutions, since life appeared on Earth, some 109 years ago. The study of these phenomena has been of particular significance because of their impact on protein stability, function,…

Biomolecules · Quantitative Biology 2023-10-25 Jorge A. Vila

By exploring a recent model [Palmeri, J., M. Manghi, and N. Destainville. 2007. Phys. Rev. Lett. 99:088103] where DNA bending elasticity, described by the wormlike chain model, is coupled to base-pair denaturation, we demonstrate that small…

Statistical Mechanics · Physics 2010-06-22 Nicolas Destainville , Manoel Manghi , John Palmeri
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