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In this work, we developed new mathematical methods for analyzing network topology and applied these methods to the analysis of brain networks. More specifically, we rigorously developed quantitative methods based on complexes constructed…

Neurons and Cognition · Quantitative Biology 2026-04-28 Heitor Baldo

Directed graphs are ubiquitous models for networks, and topological spaces they generate, such as the directed flag complex, have become useful objects in applied topology. The simplices are formed from directed cliques. We extend Atkin's…

Algebraic Topology · Mathematics 2022-02-16 Henri Riihimäki

Network data has become widespread, larger, and more complex over the years. Traditional network data is dyadic, capturing the relations among pairs of entities. With the need to model interactions among more than two entities, significant…

Social and Information Networks · Computer Science 2025-05-30 Hao Tian , Reza Zafarani

Directed q-analysis is a recent extension of q-analysis, an established method for extracting structure from networks, to directed graphs. Until recently, a lack of efficient algorithms heavily restricted the application of this technique:…

Data Structures and Algorithms · Computer Science 2025-08-22 Felix Windisch , Florian Unger

The relations, rather than the elements, constitute the structure of networks. We therefore develop a systematic approach to the analysis of networks, modelled as graphs or hypergraphs, that is based on structural properties of…

Discrete Mathematics · Computer Science 2020-12-08 Marzieh Eidi , Amirhossein Farzam , Wilmer Leal , Areejit Samal , Jürgen Jost

Network-based modeling of complex systems and data using the language of graphs has become an essential topic across a range of different disciplines. Arguably, this graph-based perspective derives its success from the relative simplicity…

Social and Information Networks · Computer Science 2023-08-11 Christian Bick , Elizabeth Gross , Heather A. Harrington , Michael T. Schaub

The irreducible complexity of natural phenomena has led Graph Neural Networks to be employed as a standard model to perform representation learning tasks on graph-structured data. While their capacity to capture local and global patterns is…

Machine Learning · Computer Science 2024-02-13 Lorenzo Giusti

The complexity of many biological, social and technological systems stems from the richness of the interactions among their units. Over the past decades, a great variety of complex systems has been successfully described as networks whose…

Topological data analysis can reveal higher-order structure beyond pairwise connections between vertices in complex networks. We present a new method based on discrete Morse theory to study topological properties of unweighted and…

Discrete Mathematics · Computer Science 2019-10-01 Harish Kannan , Emil Saucan , Indrava Roy , Areejit Samal

The study of hypergraphs has received a lot of attention over the past few years, however up until recently there has been no interest in systems where higher order interactions are not undirected. In this article we introduce the notion of…

Mathematical Physics · Physics 2024-08-28 Gonzalo Contreras-Aso , Regino Criado , Miguel Romance

Recent innovations in reconstructing large scale, full-precision, neuron-synapse-scale connectomes demand subsequent improvements to graph analysis methods to keep up with the growing complexity and size of the data. One such tool is the…

Quantitative Methods · Quantitative Biology 2025-04-25 Felix Windisch , Florian Unger

We explore pseudometrics for directed graphs in order to better understand their topological properties. The directed flag complex associated to a directed graph provides a useful bridge between network science and topology. Indeed, it has…

Algebraic Topology · Mathematics 2021-07-26 Ana Lucia Garcia-Pulido , Kathryn Hess , Jane Tan , Katharine Turner , Bei Wang , Naya Yerolemou

Networks constitute efficient tools for assessing universal features of complex systems. In physical contexts, classical as well as quantum, networks are used to describe a wide range of phenomena, such as phase transitions, intricate…

Quantum Physics · Physics 2016-01-22 Jaroslav Novotný , Gernot Alber , Igor Jex

Networks are a fundamental model of complex systems throughout the sciences, and network datasets are typically analyzed through lower-order connectivity patterns described at the level of individual nodes and edges. However, higher-order…

Social and Information Networks · Computer Science 2018-02-21 Austin R. Benson

Topological Deep Learning (TDL) has emerged as a paradigm to process and learn from signals defined on higher-order combinatorial topological spaces, such as simplicial or cell complexes. Although many complex systems have an asymmetric…

Machine Learning · Computer Science 2025-01-17 Manuel Lecha , Andrea Cavallo , Francesca Dominici , Elvin Isufi , Claudio Battiloro

In recent years, Graph Neural Networks (GNNs) have made significant advances in processing structured data. However, most of them primarily adopted a model-centric approach, which simplifies graphs by converting them into undirected formats…

Machine Learning · Computer Science 2024-12-12 Henan Sun , Xunkai Li , Daohan Su , Junyi Han , Rong-Hua Li , Guoren Wang

Many real-world phenomena are naturally modeled by graphs and networks. However, classical graph models are often limited to pairwise interactions and may not adequately capture the richer structures that arise in practice. Higher-order…

Social and Information Networks · Computer Science 2026-05-18 Takaaki Fujita , Florentin Smarandache

Online social networks are a dominant medium in everyday life to stay in contact with friends and to share information. In Twitter, users can connect with other users by following them, who in turn can follow back. In recent years,…

Social and Information Networks · Computer Science 2022-05-06 Christoph Schweimer , Christine Gfrerer , Florian Lugstein , David Pape , Jan A. Velimsky , Robert Elsässer , Bernhard C. Geiger

Directed graphs naturally model systems with asymmetric, ordered relationships, essential to applications in biology, transportation, social networks, and visual understanding. Generating such graphs enables tasks such as simulation, data…

Machine Learning · Computer Science 2026-02-20 Alba Carballo-Castro , Manuel Madeira , Yiming Qin , Dorina Thanou , Pascal Frossard

By generalizing a recent result of Hong, Liu, and Lai on characterizing the degree-sequences of simple strongly connected directed graphs, a characterization is provided for degree-sequences of simple $k$-node-connected digraphs. More…

Combinatorics · Mathematics 2017-09-05 Kristóf Bérczi , András Frank
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