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We introduce a flexible, scalable Bayesian inference framework for nonlinear dynamical systems characterised by distinct and hierarchical variability at the individual, group, and population levels. Our model class is a generalisation of…

Machine Learning · Statistics 2019-10-03 Geoffrey Roeder , Paul K. Grant , Andrew Phillips , Neil Dalchau , Edward Meeds

Multivariate decision trees are powerful machine learning tools for classification and regression that attract many researchers and industry professionals. An optimal binary tree has two types of vertices, (i) branching vertices which have…

Machine Learning · Computer Science 2024-08-05 Brandon Alston , Illya V. Hicks

Surveys are an important research tool, providing unique measurements on subjective experiences such as sentiment and opinions that cannot be measured by other means. However, because survey data is collected from a self-selected group of…

Computation · Statistics 2023-07-14 Tal Sarig , Tal Galili , Roee Eilat

We propose an empirical Bayes estimator based on Dirichlet process mixture model for estimating the sparse normalized mean difference, which could be directly applied to the high dimensional linear classification. In theory, we build a…

Machine Learning · Statistics 2017-02-17 Yunbo Ouyang , Feng Liang

PReMiuM is a recently developed R package for Bayesian clustering using a Dirichlet process mixture model. This model is an alternative to regression models, non-parametrically linking a response vector to covariate data through cluster…

This article focuses on the supervised classification of datasets with a large number of variables and a small number of instances. This is the case, for example, for microarray data sets commonly used in bioinformatics. Complex classifiers…

Quantitative Methods · Quantitative Biology 2023-11-23 Pablo Torrijos , José A. Gámez , José M. Puerta

We present an open source Python 3 library aimed at practitioners of molecular simulation, especially Monte Carlo simulation. The aims of the library are to facilitate the generation of simulation data for a wide range of problems; and to…

Class-imbalanced learning (CIL) on tabular data is important in many real-world applications where the minority class holds the critical but rare outcomes. In this paper, we present CLIMB, a comprehensive benchmark for class-imbalanced…

Machine Learning · Computer Science 2025-10-21 Zhining Liu , Zihao Li , Ze Yang , Tianxin Wei , Jian Kang , Yada Zhu , Hendrik Hamann , Jingrui He , Hanghang Tong

This study explores the potential of small language model(SLM) ensembles to achieve accuracy comparable to proprietary large language models (LLMs). We propose Ensemble Bayesian Inference (EBI), a novel approach that applies Bayesian…

Computation and Language · Computer Science 2025-12-23 Haru-Tada Sato , Fuka Matsuzaki , Jun-ichiro Takahashi

This paper introduces a novel toolbox named BIDEAL for the generation of biclusters, their analysis, visualization, and validation. The objective is to facilitate researchers to use forefront biclustering algorithms embedded on a single…

Other Computer Science · Computer Science 2020-07-29 Nishchal K. Verma , T. Sharma , S. Dixit , P. Agrawal , S. Sengupta , V. Singh

We present Active Learning for Accelerated Bayesian Inference (\texttt{alabi}): an open-source Python package for performing Bayesian inference with computationally expensive models. Given a forward model and observational data to construct…

Instrumentation and Methods for Astrophysics · Physics 2026-03-20 Jessica Birky , Rory K. Barnes

In practice, we are often faced with small-sized tabular data. However, current tabular benchmarks are not geared towards data-scarce applications, making it very difficult to derive meaningful conclusions from empirical comparisons. We…

Machine Learning · Computer Science 2024-09-04 Ricardo Knauer , Marvin Grimm , Erik Rodner

Bayesian experimental design (BED) is to answer the question that how to choose designs that maximize the information gathering. For implicit models, where the likelihood is intractable but sampling is possible, conventional BED methods…

Machine Learning · Computer Science 2021-03-16 Jiaxin Zhang , Sirui Bi , Guannan Zhang

Neural sentence embedding models for dense retrieval typically rely on binary relevance labels, treating query-document pairs as either relevant or irrelevant. However, real-world relevance often exists on a continuum, and recent advances…

Information Retrieval · Computer Science 2025-08-12 Christos Tsirigotis , Vaibhav Adlakha , Joao Monteiro , Aaron Courville , Perouz Taslakian

The R package walker extends standard Bayesian general linear models to the case where the effects of the explanatory variables can vary in time. This allows, for example, to model the effects of interventions such as changes in tax policy…

Computation · Statistics 2022-04-13 Jouni Helske

We present BSeries.jl, a Julia package for the computation and manipulation of B-series, which are a versatile theoretical tool for understanding and designing discretizations of differential equations. We give a short introduction to the…

Numerical Analysis · Mathematics 2022-12-06 David I. Ketcheson , Hendrik Ranocha

The DEViaN-LM is a R package that allows to detect the values poorly explained by a Gaussian linear model. The procedure is based on the maximum of the absolute value of the studentized residuals, which is a free statistic of the parameters…

Mathematical Software · Computer Science 2025-11-20 Geoffroy Berthelot , Guillaume Saulière , Jérôme Dedecker

Scikit-learn is a Python module integrating a wide range of state-of-the-art machine learning algorithms for medium-scale supervised and unsupervised problems. This package focuses on bringing machine learning to non-specialists using a…

Bayesian experimental design (BED) is a framework that uses statistical models and decision making under uncertainty to optimise the cost and performance of a scientific experiment. Sequential BED, as opposed to static BED, considers the…

Machine Learning · Statistics 2020-03-23 Steven Kleinegesse , Christopher Drovandi , Michael U. Gutmann

Multiple imputation (MI) is a popular approach for dealing with missing data arising from non-response in sample surveys. Multiple imputation by chained equations (MICE) is one of the most widely used MI algorithms for multivariate data,…

Machine Learning · Computer Science 2022-03-22 Zhenhua Wang , Olanrewaju Akande , Jason Poulos , Fan Li