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Gene set analysis methods rely on knowledge-based representations of genetic interactions in the form of both gene set collections and protein-protein interaction (PPI) networks. Explicit representations of genetic interactions often fail…

Quantitative Methods · Quantitative Biology 2023-02-23 Henry Cousins , Taryn Hall , Yinglong Guo , Luke Tso , Kathy Tzy-Hwa Tzeng , Le Cong , Russ Altman

This paper proposes Genetic Algorithm with Border Trades (GAB), a novel modification of the standard genetic algorithm that enhances exploration by incorporating new chromosome patterns in the breeding process. This approach significantly…

Machine Learning · Computer Science 2025-06-27 Qingchuan Lyu

Generation expansion planning (GEP) is a prominent example of capacity expansion problems in operations research. Being generally NP-hard, GEP optimization models can become intractable when nonconvex dynamics, time-coupling constraints,…

Optimization and Control · Mathematics 2025-10-13 Luca Santosuosso , Bettina Klinz , Sonja Wogrin

This paper presents our computational methodology using Genetic Algorithms (GA) for exploring the nature of RNA editing. These models are constructed using several genetic editing characteristics that are gleaned from the RNA editing system…

Neural and Evolutionary Computing · Computer Science 2007-05-23 C. Huang , L. M. Rocha

The talk describes a general approach of a genetic algorithm for multiple objective optimization problems. A particular dominance relation between the individuals of the population is used to define a fitness operator, enabling the genetic…

Artificial Intelligence · Computer Science 2008-09-03 Martin Josef Geiger

Here we propose an evolutionary algorithm that self modifies its operators at the same time that candidate solutions are evolved. This tackles convergence and lack of diversity issues, leading to better solutions. Operators are represented…

Neural and Evolutionary Computing · Computer Science 2017-12-19 Andres Felipe Cruz Salinas , Jonatan Gomez Perdomo

It has been shown that approximate message passing algorithm is effective in reconstruction problems for compressed sensing. To evaluate dynamics of such an algorithm, the state evolution (SE) has been proposed. If an algorithm can cancel…

Information Theory · Computer Science 2011-06-02 Kazushi Mimura

Solving Quadratic equation is one of the intrinsic interests as it is the simplest nonlinear equations. A novel approach for solving Quadratic Equation based on Genetic Algorithms (GAs) is presented. Genetic Algorithms (GAs) are a technique…

Neural and Evolutionary Computing · Computer Science 2013-06-20 Tanistha Nayak , Tirtharaj Dash

This paper presents a genetic algorithm (GA) approach to cost-optimal task scheduling in a production line. The system consists of a set of serial processing tasks, each with a given duration, unit execution cost, and precedence…

Neural and Evolutionary Computing · Computer Science 2026-01-05 Alireza Rezaee

Many mathematical optimization algorithms fail to sufficiently explore the solution space of high-dimensional nonlinear optimization problems due to the curse of dimensionality. This paper proposes generative models as a complement to…

Neural and Evolutionary Computing · Computer Science 2021-05-05 Pouya Rezazadeh Kalehbasti , Michael D. Lepech , Samarpreet Singh Pandher

The choice of parameters, and the design of the network architecture are important factors affecting the performance of deep neural networks. Genetic Algorithms (GA) have been used before to determine parameters of a network. Yet, GAs…

Computer Vision and Pattern Recognition · Computer Science 2018-09-28 Yantao Lu , Burak Kakillioglu , Senem Velipasalar

Exploration of task mappings plays a crucial role in achieving high performance in heterogeneous multi-processor system-on-chip (MPSoC) platforms. The problem of optimally mapping a set of tasks onto a set of given heterogeneous processors…

Performance · Computer Science 2014-07-01 Wei Quan , Andy D. Pimentel

Several types of numerical and combinatorial optimization algorithms have been used as useful tools to minimize functional forms. Generally, when those forms are non-linear or occur in problems without a specific optimization method,…

Chemical Physics · Physics 2007-05-23 Luiz Fernando Roncaratti , Ricardo Gargano , Geraldo Magela e Silva

This paper presents an optimization technique for the multi-pass face milling process. Genetic algorithm (GA) is used to obtain the optimum cutting parameters by minimizing the unit production cost for a given amount of material removal.…

Computational Engineering, Finance, and Science · Computer Science 2009-02-05 Sourabh Saha

Gene expression programming, a genotype/phenotype genetic algorithm (linear and ramified), is presented here for the first time as a new technique for the creation of computer programs. Gene expression programming uses character linear…

Artificial Intelligence · Computer Science 2007-05-23 Candida Ferreira

One important feature of complex systems are problem domains that have many local minima and substructure. Biological systems manage these local minima by switching between different subsystems depending on their environmental or…

Neural and Evolutionary Computing · Computer Science 2022-08-25 Ankit Grover , Vaishali Yadav , Bradly Alicea

The goal of this project is to develop the Genetic Algorithms (GA) for solving the Schaffer F6 function in fewer than 4000 function evaluations on a total of 30 runs. Four types of Genetic Algorithms (GA) are presented - Generational GA…

Neural and Evolutionary Computing · Computer Science 2019-11-04 Alison Jenkins , Vinika Gupta , Alexis Myrick , Mary Lenoir

A Constraint Satisfaction Problem (CSP) is a framework used for modeling and solving constrained problems. Tree-search algorithms like backtracking try to construct a solution to a CSP by selecting the variables of the problem one after…

Artificial Intelligence · Computer Science 2014-10-06 Muhammad Rezaul Karim

In this work, we present an extension of the genetic algorithm (GA) which exploits the supervised learning technique called active subspaces (AS) to evolve the individuals on a lower dimensional space. In many cases, GA requires in fact…

Numerical Analysis · Mathematics 2021-07-13 Nicola Demo , Marco Tezzele , Gianluigi Rozza

In this work, we show how a genetic algorithm (GA) can be used to find step-by-step solutions to introductory physics problems. Our perspective is that the underlying task for this is one of finding a sequence of equations that will lead to…

Neural and Evolutionary Computing · Computer Science 2025-08-18 Tom Bensky , Justin Kopcinski